7k4w
From Proteopedia
(Difference between revisions)
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==Crystal structure of Kemp Eliminase HG3.17 in the inactive state== | ==Crystal structure of Kemp Eliminase HG3.17 in the inactive state== | ||
| - | <StructureSection load='7k4w' size='340' side='right'caption='[[7k4w]]' scene=''> | + | <StructureSection load='7k4w' size='340' side='right'caption='[[7k4w]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K4W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K4W FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7k4w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theau Theau]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K4W OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K4W FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k4w OCA], [http://pdbe.org/7k4w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k4w RCSB], [http://www.ebi.ac.uk/pdbsum/7k4w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k4w ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">XYNA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5087 THEAU])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k4w OCA], [http://pdbe.org/7k4w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k4w RCSB], [http://www.ebi.ac.uk/pdbsum/7k4w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k4w ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The advent of biocatalysts designed computationally and optimized by laboratory evolution provides an opportunity to explore molecular strategies for augmenting catalytic function. Applying a suite of nuclear magnetic resonance, crystallography, and stopped-flow techniques to an enzyme designed for an elementary proton transfer reaction, we show how directed evolution gradually altered the conformational ensemble of the protein scaffold to populate a narrow, highly active conformational ensemble and accelerate this transformation by nearly nine orders of magnitude. Mutations acquired during optimization enabled global conformational changes, including high-energy backbone rearrangements, that cooperatively organized the catalytic base and oxyanion stabilizer, thus perfecting transition-state stabilization. The development of protein catalysts for many chemical transformations could be facilitated by explicitly sampling conformational substates during design and specifically stabilizing productive substates over all unproductive conformations. | ||
| + | |||
| + | How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.,Otten R, Padua RAP, Bunzel HA, Nguyen V, Pitsawong W, Patterson M, Sui S, Perry SL, Cohen AE, Hilvert D, Kern D Science. 2020 Dec 18;370(6523):1442-1446. doi: 10.1126/science.abd3623. Epub 2020, Nov 19. PMID:33214289<ref>PMID:33214289</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7k4w" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Endo-1,4-beta-xylanase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Bunzel A]] | + | [[Category: Theau]] |
| - | [[Category: Cohen | + | [[Category: Bunzel, A]] |
| - | [[Category: Hilvert D]] | + | [[Category: Cohen, A E]] |
| - | [[Category: Kern D]] | + | [[Category: Hilvert, D]] |
| - | [[Category: Nguyen V]] | + | [[Category: Kern, D]] |
| - | [[Category: Otten R]] | + | [[Category: Nguyen, V]] |
| - | [[Category: Padua | + | [[Category: Otten, R]] |
| - | [[Category: Patterson M]] | + | [[Category: Padua, R A.P]] |
| - | [[Category: Perry | + | [[Category: Patterson, M]] |
| - | [[Category: Pitsawong W]] | + | [[Category: Perry, S L]] |
| - | [[Category: Sui S]] | + | [[Category: Pitsawong, W]] |
| + | [[Category: Sui, S]] | ||
| + | [[Category: Directed evolution]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Inactive state]] | ||
| + | [[Category: Kemp elimination]] | ||
Revision as of 07:06, 30 December 2020
Crystal structure of Kemp Eliminase HG3.17 in the inactive state
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