Ubiquitin protein ligase 3D structures

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Line 110: Line 110:
**[[2y1m]] – hUPL - human<br />
**[[2y1m]] – hUPL - human<br />
**[[1d5f]] – hUPL catalytic domain <br />
**[[1d5f]] – hUPL catalytic domain <br />
 +
**[[6tgk]] – hUPL C-lobe domain <br />
**[[2dk3]] – hUPL catalytic domain - NMR<br />
**[[2dk3]] – hUPL catalytic domain - NMR<br />
**[[1yiu]] – hUPL WW3 domain - NMR<br />
**[[1yiu]] – hUPL WW3 domain - NMR<br />
Line 299: Line 300:
**[[2knb]] – rUPL + endophilin - NMR <br />
**[[2knb]] – rUPL + endophilin - NMR <br />
**[[5caw]] – UPL + ubiquitin – body louse<br />
**[[5caw]] – UPL + ubiquitin – body louse<br />
 +
 +
*'''Ubiquitin protein ligase PRT6'''
 +
 +
**[[6lhn]] – AtUPL <br />
*'''Ubiquitin protein ligase RAD18''' Domains: RING 1-99; UBZ 198-227; rad6-binding 340-366
*'''Ubiquitin protein ligase RAD18''' Domains: RING 1-99; UBZ 198-227; rad6-binding 340-366
Line 343: Line 348:
**[[4ppe]], [[3ng2]] – hUPL 4 RING domain <br />
**[[4ppe]], [[3ng2]] – hUPL 4 RING domain <br />
-
**[[4ap4]], [[5ait]], [[5aiu]] – hUPL 4 RING domain + E2 N + ubiquitin<br />
 
**[[2pie]] – hUPL 8 FHA domain <br />
**[[2pie]] – hUPL 8 FHA domain <br />
**[[2csw]] – hUPL 8 FHA domain - NMR <br />
**[[2csw]] – hUPL 8 FHA domain - NMR <br />
**[[4ayc]], [[4gb0]] – hUPL 8 RING domain <br />
**[[4ayc]], [[4gb0]] – hUPL 8 RING domain <br />
-
**[[4orh]] – hUPL 8 residues 345-485 + E2 N <br />
 
-
**[[4whv]] – hUPL 8 residues 345-485 + ubiquitin + E2 N <br />
 
**[[5zc4]] – hUPL 13 RING domain <br />
**[[5zc4]] – hUPL 13 RING domain <br />
-
**[[5d1k]], [[5d1l]], [[5d1m]] – hUPL 25 residues 126-258 + E2 D2 <br />
 
**[[4juy]], [[4oyj]], [[4p09]] – hUPL 31 PUB domain <br />
**[[4juy]], [[4oyj]], [[4p09]] – hUPL 31 PUB domain <br />
**[[4ljq]], [[6gzy]] – hUPL 31 catalytic domain <br />
**[[4ljq]], [[6gzy]] – hUPL 31 catalytic domain <br />
 +
**[[2ma6]] – hUPL 123 RING domain - NMR<br />
 +
**[[5dka]] – hUPL 125 (mutant)<br />
 +
**[[2n9o]] – hUPL 126 N-terminal - NMR<br />
 +
**[[3icu]] – hUPL 128 protease-associated domain <br />
 +
**[[3v3l]] – hUPL 146 WWE domain <br />
 +
**[[5d0i]] – hUPL 165 residues 255-348 <br />
 +
**[[3l11]], [[4gb0]] – hUPL 168 RING domain <br />
 +
**[[5zi6]] – hUPL 194 residues 605-659<br />
 +
 +
*'''Ubiquitin protein ligase RNF complex'''
 +
 +
**[[4ap4]], [[5ait]], [[5aiu]] – hUPL 4 RING domain + E2 N + ubiquitin<br />
 +
**[[4orh]] – hUPL 8 residues 345-485 + E2 N <br />
 +
**[[4whv]] – hUPL 8 residues 345-485 + ubiquitin + E2 N <br />
 +
**[[5d1k]], [[5d1l]], [[5d1m]] – hUPL 25 residues 126-258 + E2 D2 <br />
 +
**[[6gzy]] – hUPL 31 catalytic domain + inhibitor<br />
**[[6sc6]] – hUPL 31 catalytic domain + antibody<br />
**[[6sc6]] – hUPL 31 catalytic domain + antibody<br />
**[[6sc5]], [[6sc7]], [[6sc8]], [[6sc9]] – hUPL 31 catalytic domain + antibody + inhibitor<br />
**[[6sc5]], [[6sc7]], [[6sc8]], [[6sc9]] – hUPL 31 catalytic domain + antibody + inhibitor<br />
**[[4ljo]] – hUPL 31 catalytic domain + ubiquitin<br />
**[[4ljo]] – hUPL 31 catalytic domain + ubiquitin<br />
-
**[[5edv]] – hUPL 31 catalytic domain + ubiquitin + E2<br />
 
**[[4ljp]] – hUPL 31 catalytic domain (mutant) + ubiquitin<br />
**[[4ljp]] – hUPL 31 catalytic domain (mutant) + ubiquitin<br />
 +
**[[5edv]] – hUPL 31 catalytic domain + ubiquitin + E2<br />
**[[4owf]] – hUPL 31 catalytic domain + nf-κ-B modulator<br />
**[[4owf]] – hUPL 31 catalytic domain + nf-κ-B modulator<br />
**[[4oyk]], [[4p0b]] – hUPL 31 PUB domain + otulin<br />
**[[4oyk]], [[4p0b]] – hUPL 31 PUB domain + otulin<br />
Line 367: Line 384:
**[[4v3k]], [[4v3l]] – hUPL 38 residues 439-515 + polyubiquitin-C + E2 D2<br />
**[[4v3k]], [[4v3l]] – hUPL 38 residues 439-515 + polyubiquitin-C + E2 D2<br />
**[[4kng]] – hUPL 43 PA domain + LGR5 + RSPO1<br />
**[[4kng]] – hUPL 43 PA domain + LGR5 + RSPO1<br />
-
**[[2ma6]] – hUPL 123 RING domain - NMR<br />
 
-
**[[5dka]] – hUPL 125 (mutant)<br />
 
-
**[[2n9o]] – hUPL 126 N-terminal - NMR<br />
 
**[[2n9p]] – hUPL 126 N-terminal + BAG6 ubiquitin-like domain - NMR<br />
**[[2n9p]] – hUPL 126 N-terminal + BAG6 ubiquitin-like domain - NMR<br />
-
**[[3icu]] – hUPL 128 protease-associated domain <br />
 
-
**[[3v3l]] – hUPL 146 WWE domain <br />
 
-
**[[5d0i]] – hUPL 165 residues 255-348 <br />
 
**[[5d0k]], [[5d0m]], [[5ulh]], [[5ulk]] – hUPL 165 residues 255-348 + ubiquitin + E2 D2 <br />
**[[5d0k]], [[5d0m]], [[5ulh]], [[5ulk]] – hUPL 165 residues 255-348 + ubiquitin + E2 D2 <br />
-
**[[3l11]], [[4gb0]] – hUPL 168 RING domain <br />
 
**[[5xis]], [[5ydk]] – hUPL 168 residues 110-188 + diubiquitin <br />
**[[5xis]], [[5ydk]] – hUPL 168 residues 110-188 + diubiquitin <br />
**[[5vey]] – hUPL 169 residues 653-708 + polyubiquitin + histone 2B - NMR<br />
**[[5vey]] – hUPL 169 residues 653-708 + polyubiquitin + histone 2B - NMR<br />
-
**[[5zi6]] – hUPL 194 residues 605-659<br />
 
**[[2rsf]] – mUPL 146 WWE domain + ATP<br />
**[[2rsf]] – mUPL 146 WWE domain + ATP<br />
**[[4qpl]] – mUPL 146 RING+WWE domains + E2<br />
**[[4qpl]] – mUPL 146 RING+WWE domains + E2<br />
Line 434: Line 443:
**[[5olm]] – hUPL 21 residues 1-129<br />
**[[5olm]] – hUPL 21 residues 1-129<br />
**[[5jpx]] – hUPL 21 B2-Box domain - NMR <br />
**[[5jpx]] – hUPL 21 B2-Box domain - NMR <br />
-
**[[6s53]] – hUPL 21 RING domain + ubiquitin + E2 N <br />
 
**[[5vzv]] – hUPL 23 RING domain <br />
**[[5vzv]] – hUPL 23 RING domain <br />
-
**[[5vzw]] – hUPL 23 RING domain + ubiquitin + E2 D2 <br />
 
-
**[[5eya]] – hUPL 25 RING domain + ubiquitin + E2 N <br />
 
-
**[[5fer]] – hUPL 25 RING domain + ribosomal protein S2 + E2 D1 <br />
 
**[[6flm]] – hUPL 25 PRY-SPRY domain <br />
**[[6flm]] – hUPL 25 PRY-SPRY domain <br />
**[[6fln]] – hUPL 25 PRY-SPRY + coiled-coil domains <br />
**[[6fln]] – hUPL 25 PRY-SPRY + coiled-coil domains <br />
**[[4ltb]] – hUPL 25 coiled-coil <br />
**[[4ltb]] – hUPL 25 coiled-coil <br />
**[[4cfg]] – hUPL 25 coiled-coil (mutant)<br />
**[[4cfg]] – hUPL 25 coiled-coil (mutant)<br />
-
**[[5nt2]], [[5nt1]] – hUPL 25 coiled-coil + nonstructural protein<br />
 
**[[6i9h]] – hUPL 28 RING domain - NMR <br />
**[[6i9h]] – hUPL 28 RING domain - NMR <br />
**[[2yjs]], [[2ysl]] – hUPL 31 RING domain - NMR <br />
**[[2yjs]], [[2ysl]] – hUPL 31 RING domain - NMR <br />
Line 449: Line 453:
**[[2ct2]] – hUPL 32 RING domain - NMR<br />
**[[2ct2]] – hUPL 32 RING domain - NMR<br />
**[[3u5m]] – hUPL 33 PHD+Bromo domains <br />
**[[3u5m]] – hUPL 33 PHD+Bromo domains <br />
-
**[[3u5n]], [[3u5o]], [[3u5p]], [[5mr8]] – hUPL 33 PHD+Bromo domain + H3-histone peptide <br />
 
**[[3ddt]] – hUPL 37 B2-box <br />
**[[3ddt]] – hUPL 37 B2-box <br />
**[[4m3l]] – hUPL 63 coiled-coil domain <br />
**[[4m3l]] – hUPL 63 coiled-coil domain <br />
Line 455: Line 458:
**[[3kb5]] – hUPL 72 PRY-SPRY domain <br />
**[[3kb5]] – hUPL 72 PRY-SPRY domain <br />
**[[2v0k]] – mUPL 21 PRY-SPRY domain <br />
**[[2v0k]] – mUPL 21 PRY-SPRY domain <br />
-
**[[3zo0]] – mUPL 21 PRY-SPRY domain + IG γ-2A<br />
 
**[[4b8e]] – mUPL 25 PRY-SPRY domain <br />
**[[4b8e]] – mUPL 25 PRY-SPRY domain <br />
 +
 +
*'''Ubiquitin protein ligase TRIM complexes'''
 +
 +
**[[6s53]] – hUPL 21 RING domain + ubiquitin + E2 N <br />
 +
**[[5vzw]] – hUPL 23 RING domain + ubiquitin + E2 D2 <br />
 +
**[[5eya]] – hUPL 25 RING domain + ubiquitin + E2 N <br />
 +
**[[5fer]] – hUPL 25 RING domain + ribosomal protein S2 + E2 D1 <br />
 +
**[[5nt2]], [[5nt1]] – hUPL 25 coiled-coil + nonstructural protein<br />
 +
**[[3u5n]], [[3u5o]], [[3u5p]], [[5mr8]] – hUPL 33 PHD+Bromo domain + H3-histone peptide <br />
 +
**[[3zo0]] – mUPL 21 PRY-SPRY domain + IG γ-2A<br />
*'''Ubiquitin protein ligase UBR'''
*'''Ubiquitin protein ligase UBR'''

Revision as of 11:47, 4 January 2021

3D Structures of ubiquitin protein ligase

Updated on 04-January-2021 - For a general description of the protein see Ubiquitin protein ligase

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky

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