Ubiquitin protein ligase 3D structures

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Line 17: Line 17:
**[[4kbl]], [[4kc9]] – hUPL<br />
**[[4kbl]], [[4kc9]] – hUPL<br />
**[[2m9y]] – hUPL catalytic domain - NMR<br />
**[[2m9y]] – hUPL catalytic domain - NMR<br />
-
**[[5udh]], [[5tte]] – hUPL + ubiqitin-conjugating enzyme E2 L3 + ubiquitin<br />
+
**[[5udh]], [[5tte]] – hUPL + E2 L3 + ubiquitin<br />
*'''Ubiquitin protein ligase Arkadia'''
*'''Ubiquitin protein ligase Arkadia'''
Line 52: Line 52:
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[5o76]] – hUPL residues 47-435 (mutant) + ZAP peptide <br />
**[[5o76]] – hUPL residues 47-435 (mutant) + ZAP peptide <br />
-
**[[4a49]] – hUPL RING domain + ubiquitin conjugating enzyme E2 <br />
+
**[[4a49]] – hUPL RING domain + E2 D2 <br />
**[[5axi]] – mUPL-B TKB domain + cblin <br />
**[[5axi]] – mUPL-B TKB domain + cblin <br />
Line 129: Line 129:
**[[3bum]], [[3bun]], [[3buo]], [[3buw]], [[3bux]], [[3ob1]], [[3ob2]], [[3rlf]], [[3pfv]] – hUPL TKB domain + peptide <br />
**[[3bum]], [[3bun]], [[3buo]], [[3buw]], [[3bux]], [[3ob1]], [[3ob2]], [[3rlf]], [[3pfv]] – hUPL TKB domain + peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
**[[2y1n]] – hUPL residues 47-435 + ZAP peptide <br />
-
**[[4a4b]], [[4a4c]] – hUPL TKB domain (mutant) + ZAP peptide + ubiquitin conjugating enzyme E2 D2<br />
+
**[[4a4b]], [[4a4c]] – hUPL TKB domain (mutant) + ZAP peptide + E2 D2<br />
-
**[[1c4z]] – hUPL catalytic domain + ubiquitin conjugating enzyme E2 <br />
+
**[[1c4z]] – hUPL catalytic domain + E2 <br />
-
**[[4a49]] – hUPL residues 354-435 + ubiquitin conjugating enzyme E2 D2 <br />
+
**[[4a49]] – hUPL residues 354-435 + E2 D2 <br />
*'''Ubiquitin protein ligase EDD1'''
*'''Ubiquitin protein ligase EDD1'''
Line 141: Line 141:
**[[3zqs]] – hUPL residues 109-294<br />
**[[3zqs]] – hUPL residues 109-294<br />
**[[4ccg]] – hUPL RING domain + E2 T<br />
**[[4ccg]] – hUPL RING domain + E2 T<br />
-
**[[3k1l]] – UPL - ''Drosophila melanogaster''<br />
+
**[[3k1l]] – DmUPL - ''Drosophila melanogaster''<br />
*'''Ubiquitin protein ligase HAKAI'''
*'''Ubiquitin protein ligase HAKAI'''
Line 204: Line 204:
**[[3b76]] – hUPL 3rd PDZ domain <br />
**[[3b76]] – hUPL 3rd PDZ domain <br />
**[[5h7r]] – hUPL residues 11-138 <br />
**[[5h7r]] – hUPL residues 11-138 <br />
-
**[[5h7s]] – hUPL residues 11-138 + ubiquitin conjugating enzyme E2 N + ubiquitin <br />
+
**[[5h7s]] – hUPL residues 11-138 + E2 N + ubiquitin <br />
**[[3vqf]] – mUPL 2rd PDZ domain <br />
**[[3vqf]] – mUPL 2rd PDZ domain <br />
**[[3vqg]] – mUPL 2rd PDZ domain + peptide<br />
**[[3vqg]] – mUPL 2rd PDZ domain + peptide<br />
Line 226: Line 226:
*'''Ubiquitin protein ligase MSL-2'''
*'''Ubiquitin protein ligase MSL-2'''
-
**[[4rkg]], [[4rkh]] – DmUPL CXC domain + DNA - ''Drosophila melanogaster'' <br />
+
**[[4rkg]], [[4rkh]] – DmUPL CXC domain + DNA<br />
*'''Ubiquitin protein ligase MYCBP2'''
*'''Ubiquitin protein ligase MYCBP2'''
**[[5o6c]] – hUPL residues 4379-4638 <br />
**[[5o6c]] – hUPL residues 4379-4638 <br />
 +
**[[6t7f]] – hUPL + ubiquitin + E2 D3<br />
**[[3gbw]] – mUPL 1st PHR domain <br />
**[[3gbw]] – mUPL 1st PHR domain <br />
**[[3hwj]] – mUPL 2nd PHR domain <br />
**[[3hwj]] – mUPL 2nd PHR domain <br />
Line 239: Line 240:
**[[6qlz]] – hUPL F3ab domain <br />
**[[6qlz]] – hUPL F3ab domain <br />
**[[2yhn]] – hUPL RING domain <br />
**[[2yhn]] – hUPL RING domain <br />
-
**[[2yho]] – hUPL RING domain + ubiquitin-conjugating enzyme<br />
+
**[[2yho]] – hUPL RING domain + E2<br />
*'''Ubiquitin protein ligase NEDD4'''
*'''Ubiquitin protein ligase NEDD4'''
Line 269: Line 270:
**[[2nsq]] – hUPL C2 domain <br />
**[[2nsq]] – hUPL C2 domain <br />
**[[2mpt]] – hUPL WW3+PY domain - NMR<br />
**[[2mpt]] – hUPL WW3+PY domain - NMR<br />
 +
**[[2mpt]] – hUPL WWWP1 - NMR<br />
**[[5hpk]] – hUPL HECT domain + ubiquitin <br />
**[[5hpk]] – hUPL HECT domain + ubiquitin <br />
-
**[[3jvz]], [[3jw0]] – hUPL HECT domain + ubiquitin + ubiquitin-conjugating enzyme D2<br />
+
**[[3jvz]], [[3jw0]] – hUPL HECT domain + ubiquitin + E2 D2<br />
-
**[[2lty]],[[2lb2]] – hUPL WW2 domain + peptide - NMR <br />
+
**[[2lty]], [[2lb2]] – hUPL WW2 domain + peptide - NMR <br />
**[[2laj]] – hUPL WW3 domain + peptide - NMR <br />
**[[2laj]] – hUPL WW3 domain + peptide - NMR <br />
Line 291: Line 293:
*'''Ubiquitin protein ligase PARKIN'''
*'''Ubiquitin protein ligase PARKIN'''
-
**[[5c1z]], [[5c23]], [[6hue]] – hUPL <br />
+
**[[5c1z]], [[5c23]] – hUPL <br />
-
**[[5c9v]] – hUPL (mutant)<br />
+
**[[5c9v]], [[6hue]] – hUPL (mutant)<br />
**[[2jmo]] – hUPL IBR domain - NMR <br />
**[[2jmo]] – hUPL IBR domain - NMR <br />
**[[2m48]] – hUPL IBR+RING domain - NMR <br />
**[[2m48]] – hUPL IBR+RING domain - NMR <br />
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**[[4i1f]] – hUPL catalytic domain (mutant)<br />
**[[4i1f]] – hUPL catalytic domain (mutant)<br />
**[[5n2w]], [[6glc]], [[5n38]] – hUPL + polyubiquitin <br />
**[[5n2w]], [[6glc]], [[5n38]] – hUPL + polyubiquitin <br />
-
**[[6djw]] – hUPL + ubiquitin + E2<br />
+
**[[6djw]] – hUPL + ubiquitin + E2 L3<br />
-
**[[6djx]] – hUPL (mutant) + ubiquitin + E2<br />
+
**[[6n13]] – hUPL + ubiquitin + polyubiquitin + E2 L3<br />
-
**[[6n13]] – hUPL (mutant) + ubiquitin + E2 + phophoubiquitin - NMR<br />
+
**[[6djx]] – hUPL (mutant) + ubiquitin + E2 L3<br />
 +
**[[6n13]] – hUPL (mutant) + ubiquitin + E2 L3+ phophoubiquitin - NMR<br />
**[[3b1l]] – mUPL ubiquitin-like domain <br />
**[[3b1l]] – mUPL ubiquitin-like domain <br />
**[[4k7d]] – rUPL C terminal domain <br />
**[[4k7d]] – rUPL C terminal domain <br />
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**[[2mrf]], [[5vf0]] – hUPL UBZ domain - NMR <br />
**[[2mrf]], [[5vf0]] – hUPL UBZ domain - NMR <br />
**[[2mre]] – hUPL UBZ domain + ubiquitin - NMR <br />
**[[2mre]] – hUPL UBZ domain + ubiquitin - NMR <br />
-
**[[2ybf]] – hUPL rad6-binding domain + ubiqitin-conjugating enzyme E2 B <br />
+
**[[2ybf]] – hUPL rad6-binding domain + E2 B <br />
*'''Ubiquitin protein ligase RavN'''
*'''Ubiquitin protein ligase RavN'''
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**[[5hqg]] – hUPL 2 <br />
**[[5hqg]] – hUPL 2 <br />
-
**[[6igq]] – hUPL 2 WD3-repeat domain + Trib peptide <br />
 
**[[6cvz]] – hUPL 3 WD40-repeat domain <br />
**[[6cvz]] – hUPL 3 WD40-repeat domain <br />
Line 359: Line 361:
**[[2ckl]] – mUPL RING domain + polycomb group ring finger protein 4 <br />
**[[2ckl]] – mUPL RING domain + polycomb group ring finger protein 4 <br />
**[[2h0d]] – mUPL RING domain + B lymphoma MO-MLV insertion region <br />
**[[2h0d]] – mUPL RING domain + B lymphoma MO-MLV insertion region <br />
 +
 +
*'''Ubiquitin protein ligase RLIM/Rnf12'''
 +
 +
**[[6w7z]] – hUPL RING domain + E2 D2<br />
 +
**[[6w9a]] – hUPL RING domain + E2 E2<br />
 +
**[[6w9d]] – hUPL RING domain + ubiquitin + E2 D2<br />
*'''Ubiquitin protein ligase RNF or ring finger protein''' Domains: PUB 1-184; RING 216-290; catalytic 853-1072;
*'''Ubiquitin protein ligase RNF or ring finger protein''' Domains: PUB 1-184; RING 216-290; catalytic 853-1072;
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**[[4ljo]] – hUPL 31 catalytic domain + ubiquitin<br />
**[[4ljo]] – hUPL 31 catalytic domain + ubiquitin<br />
**[[4ljp]] – hUPL 31 catalytic domain (mutant) + ubiquitin<br />
**[[4ljp]] – hUPL 31 catalytic domain (mutant) + ubiquitin<br />
-
**[[5edv]] – hUPL 31 catalytic domain + ubiquitin + E2<br />
+
**[[5edv]] – hUPL 31 catalytic domain + ubiquitin + E2 D2<br />
**[[4owf]] – hUPL 31 catalytic domain + nf-κ-B modulator<br />
**[[4owf]] – hUPL 31 catalytic domain + nf-κ-B modulator<br />
**[[4oyk]], [[4p0b]] – hUPL 31 PUB domain + otulin<br />
**[[4oyk]], [[4p0b]] – hUPL 31 PUB domain + otulin<br />
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**[[2jqz]] – hUPL 2 C2 domain - NMR <br />
**[[2jqz]] – hUPL 2 C2 domain - NMR <br />
**[[2kxq]] – hUPL 2 WW2 and WW3 + peptide<br />
**[[2kxq]] – hUPL 2 WW2 and WW3 + peptide<br />
 +
**[[6fx4]] – hUPL 2 + ubiquitin<br />
*'''Ubiquitin protein ligase SopA'''
*'''Ubiquitin protein ligase SopA'''
-
**[[2qyu]], [[2qza]] – SeUPL residues 165-782 - ''Salmonella enterica'' <br />
+
**[[2qyu]], [[2qza]] – SeUPL residues 165-782<br />
-
**[[3sy2]] – SeUPL residues 165-782 + ubiquitin + ubiquitin-conjugating enzyme - ''Salmonella enterica'' <br />
+
**[[3sy2]] – SeUPL residues 165-782 + ubiquitin + E2 L3<br />
**[[5jw7]] – SeUPL residues 163-425 + TRIM56 <br />
**[[5jw7]] – SeUPL residues 163-425 + TRIM56 <br />
Line 507: Line 516:
**[[3nih]], [[3nii]], [[3nij]], [[3nik]], [[3nil]], [[3nim]], [[3nin]] – yUPL 1 UBR-box + peptide<br />
**[[3nih]], [[3nii]], [[3nij]], [[3nik]], [[3nil]], [[3nim]], [[3nin]] – yUPL 1 UBR-box + peptide<br />
-
*'''Ubiquitin protein ligase UHRF (Np95)''' Domains TUDOR 125-285; PHD finger 314-367; SRA 414-617; polybasic 638-678' RING 672-793
+
*'''Ubiquitin protein ligase UHRF (Np95)''' Domains TUDOR 125-285; TTD 146-313; PHD finger 314-367; SRA 414-617; polybasic 638-678' RING 672-793
**[[3sox]], [[3zvz]] – hUPL 1 PHD finger <br />
**[[3sox]], [[3zvz]] – hUPL 1 PHD finger <br />

Revision as of 10:02, 6 January 2021

3D Structures of ubiquitin protein ligase

Updated on 06-January-2021 - For a general description of the protein see Ubiquitin protein ligase

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Jaime Prilusky

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