7k41

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'''Unreleased structure'''
 
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The entry 7k41 is ON HOLD until Paper Publication
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==Bacterial O-GlcNAcase (OGA) with compound==
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<StructureSection load='7k41' size='340' side='right'caption='[[7k41]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7k41]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K41 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K41 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=VUA:4-(4-methylpiperidin-1-yl)-N-(2-phenylethyl)pyrimidin-2-amine'>VUA</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein_O-GlcNAcase Protein O-GlcNAcase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.169 3.2.1.169] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k41 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k41 OCA], [http://pdbe.org/7k41 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k41 RCSB], [http://www.ebi.ac.uk/pdbsum/7k41 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k41 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/OGA_BACTN OGA_BACTN]] Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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O-GlcNAcase (OGA) has received increasing attention as an attractive therapeutic target for tau-mediated neurodegenerative disorders; however, its role in these pathologies remains unclear. Therefore, potent chemical tools with favorable pharmacokinetic profiles are desirable to characterize this enzyme. Herein, we report the discovery of a potent and novel OGA inhibitor, compound 5i, comprising an aminopyrimidine scaffold, identified by virtual screening based on multiple methodologies combining structure-based and ligand-based approaches, followed by sequential optimization with a focus on ligand lipophilicity efficiency. This compound was observed to increase the level of O-GlcNAcylated protein in cells and display suitable pharmacokinetic properties and brain permeability. Crystallographic analysis revealed that the chemical series bind to OGA via characteristic hydrophobic interactions, which resulted in a high affinity for OGA with moderate lipophilicity. Compound 5i could serve as a useful chemical probe to help establish a proof-of-concept of OGA inhibition as a therapeutic target for the treatment of tauopathies.
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Authors: Lane, W., Tjhen, R., Snell, G., Sang, B.
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Discovery of a Novel and Brain-Penetrant O-GlcNAcase Inhibitor via Virtual Screening, Structure-Based Analysis, and Rational Lead Optimization.,Tawada M, Fushimi M, Masuda K, Sun H, Uchiyama N, Kosugi Y, Lane W, Tjhen R, Endo S, Koike T J Med Chem. 2021 Jan 6. doi: 10.1021/acs.jmedchem.0c01712. PMID:33404239<ref>PMID:33404239</ref>
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Description: Bacterial O-GlcNAcase (OGA) with compound
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Snell, G]]
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<div class="pdbe-citations 7k41" style="background-color:#fffaf0;"></div>
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[[Category: Sang, B]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Ecoli]]
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[[Category: Large Structures]]
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[[Category: Protein O-GlcNAcase]]
[[Category: Lane, W]]
[[Category: Lane, W]]
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[[Category: Sang, B]]
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[[Category: Snell, G]]
[[Category: Tjhen, R]]
[[Category: Tjhen, R]]
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[[Category: Oga]]
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[[Category: Sbdd]]
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[[Category: Structure based drug design]]
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[[Category: Transferase]]
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[[Category: Transferase-transferase inhibitor complex]]
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[[Category: Virtual screening]]

Revision as of 05:56, 20 January 2021

Bacterial O-GlcNAcase (OGA) with compound

PDB ID 7k41

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