6zqq

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==Structure of the Pmt3-MIR domain with bound ligands==
==Structure of the Pmt3-MIR domain with bound ligands==
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<StructureSection load='6zqq' size='340' side='right'caption='[[6zqq]]' scene=''>
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<StructureSection load='6zqq' size='340' side='right'caption='[[6zqq]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZQQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ZQQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6zqq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZQQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6ZQQ FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zqq OCA], [http://pdbe.org/6zqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zqq RCSB], [http://www.ebi.ac.uk/pdbsum/6zqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zqq ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PMT3, GI526_G0005657 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6zqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zqq OCA], [http://pdbe.org/6zqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6zqq RCSB], [http://www.ebi.ac.uk/pdbsum/6zqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6zqq ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/A0A6A5Q4I2_YEASX A0A6A5Q4I2_YEASX]] Transfers mannose from Dol-P-mannose to Ser or Thr residues on proteins.[RuleBase:RU367007]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein O-mannosyltransferases (PMTs) represent a conserved family of multispanning endoplasmic reticulum membrane proteins involved in glycosylation of S/T-rich protein substrates and unfolded proteins. PMTs work as dimers and contain a luminal MIR domain with a beta-trefoil fold, which is susceptive for missense mutations causing alpha-dystroglycanopathies in humans. Here, we analyze PMT-MIR domains by an integrated structural biology approach using X-ray crystallography and NMR spectroscopy and evaluate their role in PMT function in vivo. We determine Pmt2- and Pmt3-MIR domain structures and identify two conserved mannose-binding sites, which are consistent with general beta-trefoil carbohydrate-binding sites (alpha, beta), and also a unique PMT2-subfamily exposed FKR motif. We show that conserved residues in site alpha influence enzyme processivity of the Pmt1-Pmt2 heterodimer in vivo. Integration of the data into the context of a Pmt1-Pmt2 structure and comparison with homologous beta-trefoil - carbohydrate complexes allows for a functional description of MIR domains in protein O-mannosylation.
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Functional implications of MIR domains in protein O-mannosylation.,Chiapparino A, Grbavac A, Jonker HR, Hackmann Y, Mortensen S, Zatorska E, Schott A, Stier G, Saxena K, Wild K, Schwalbe H, Strahl S, Sinning I Elife. 2020 Dec 24;9. pii: 61189. doi: 10.7554/eLife.61189. PMID:33357379<ref>PMID:33357379</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6zqq" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Atcc 18824]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chiapparino A]]
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[[Category: Chiapparino, A]]
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[[Category: Hackmann Y]]
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[[Category: Hackmann, Y]]
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[[Category: Mortensen S]]
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[[Category: Mortensen, S]]
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[[Category: Sinning I]]
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[[Category: Sinning, I]]
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[[Category: Wild K]]
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[[Category: Wild, K]]
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[[Category: Beta-trefoil]]
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[[Category: Carbohydrate-binding module]]
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[[Category: Mir domain]]
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[[Category: Peptide binding protein]]
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[[Category: Protein-o-mannosylation]]

Revision as of 06:03, 20 January 2021

Structure of the Pmt3-MIR domain with bound ligands

PDB ID 6zqq

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