7k5e
From Proteopedia
(Difference between revisions)
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==1.75 A resolution structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor JAG-5-7== | ==1.75 A resolution structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor JAG-5-7== | ||
- | <StructureSection load='7k5e' size='340' side='right'caption='[[7k5e]]' scene=''> | + | <StructureSection load='7k5e' size='340' side='right'caption='[[7k5e]], [[Resolution|resolution]] 1.75Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K5E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K5E FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7k5e]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K5E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K5E FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k5e OCA], [http://pdbe.org/7k5e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k5e RCSB], [http://www.ebi.ac.uk/pdbsum/7k5e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k5e ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=VXM:4-{[(5-fluoro-2-hydroxyphenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione'>VXM</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bfrB, PA3531 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k5e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k5e OCA], [http://pdbe.org/7k5e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k5e RCSB], [http://www.ebi.ac.uk/pdbsum/7k5e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k5e ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/Q9HY79_PSEAE Q9HY79_PSEAE]] Iron-storage protein (By similarity). Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Bacteria depend on a well-regulated iron homeostasis to survive adverse environments. A key component of the iron homeostasis machinery is the compartmentalization of Fe(3+) in bacterioferritin and its subsequent mobilization as Fe(2+) to satisfy metabolic requirements. In Pseudomonas aeruginosa Fe(3+) is compartmentalized in bacterioferritin (BfrB), and its mobilization to the cytosol requires binding of a ferredoxin (Bfd) to reduce the stored Fe(3+) and release the soluble Fe(2+). Blocking the BfrB-Bfd complex in P. aeruginosa by deletion of the bfd gene triggers an irreversible accumulation of Fe(3+) in BfrB, concomitant cytosolic iron deficiency and significant impairment of biofilm development. Herein we report that small molecules developed to bind BfrB at the Bfd binding site block the BfrB-Bfd complex, inhibit the mobilization of iron from BfrB in P. aeruginosa cells, elicit a bacteriostatic effect on planktonic cells, and are bactericidal to cells embedded in mature biofilms. | ||
+ | |||
+ | Small Molecule Inhibitors of the Bacterioferritin (BfrB)-Ferredoxin (Bfd) Complex Kill Biofilm-Embedded Pseudomonas aeruginosa Cells.,Soldano A, Yao H, Punchi Hewage AND, Meraz K, Annor-Gyamfi JK, Bunce RA, Battaile KP, Lovell S, Rivera M ACS Infect Dis. 2020 Dec 3. doi: 10.1021/acsinfecdis.0c00669. PMID:33269912<ref>PMID:33269912</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7k5e" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Ferroxidase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Annor-Gyamfi | + | [[Category: Pseae]] |
- | [[Category: Battaile | + | [[Category: Annor-Gyamfi, J K]] |
- | [[Category: Bunce | + | [[Category: Battaile, K P]] |
- | [[Category: Lovell S]] | + | [[Category: Bunce, R A]] |
- | [[Category: Meraz K]] | + | [[Category: Lovell, S]] |
- | [[Category: Punchi-Hewage A]] | + | [[Category: Meraz, K]] |
- | [[Category: Rivera M]] | + | [[Category: Punchi-Hewage, A]] |
- | [[Category: Soldano A]] | + | [[Category: Rivera, M]] |
- | [[Category: Yao H]] | + | [[Category: Soldano, A]] |
+ | [[Category: Yao, H]] | ||
+ | [[Category: Biofilm]] | ||
+ | [[Category: Electron transport]] | ||
+ | [[Category: Iron binding]] | ||
+ | [[Category: Iron mobilization]] | ||
+ | [[Category: Iron storage]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Protein-protein interaction inhibitor]] |
Revision as of 08:30, 20 January 2021
1.75 A resolution structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor JAG-5-7
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Categories: Ferroxidase | Large Structures | Pseae | Annor-Gyamfi, J K | Battaile, K P | Bunce, R A | Lovell, S | Meraz, K | Punchi-Hewage, A | Rivera, M | Soldano, A | Yao, H | Biofilm | Electron transport | Iron binding | Iron mobilization | Iron storage | Oxidoreductase | Protein-protein interaction inhibitor