Sandbox Reserved 1646

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The overall pocket in GnRH1R is defined by the N terminus, TM2, TM3, TM5, TM6, and TM7, forming a highly <scene name='86/868179/Binding_site/4'>hydrophobic binding site</scene> with a few polar residues (D98, N102, K121, and N305)
The overall pocket in GnRH1R is defined by the N terminus, TM2, TM3, TM5, TM6, and TM7, forming a highly <scene name='86/868179/Binding_site/4'>hydrophobic binding site</scene> with a few polar residues (D98, N102, K121, and N305)
The orthosteric binding pocket of GnRH1R is solvent-accessible, appears relatively shallow and plasticity is indicated with respect to different ligands. Structural analysis provides the possibility to design orally deliverable small molecules with activity towards the receptor.
The orthosteric binding pocket of GnRH1R is solvent-accessible, appears relatively shallow and plasticity is indicated with respect to different ligands. Structural analysis provides the possibility to design orally deliverable small molecules with activity towards the receptor.
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A detailed interaction network for elagolix has been described<ref>DOI: 10.1038/s41467-020-19109-w</ref> in which the N-terminus, residue Y283 and a polar <scene name='86/868179/Interacton-elox/2'>interaction network</scene> formed by residues D98 and K121 are of particular importance for ligand recognition.
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A detailed interaction network for elagolix has been described<ref>DOI: 10.1038/s41467-020-19109-w</ref> in which the N-terminus, residue Y283 and a polar <scene name='86/868179/Interacton-elox/3'>interaction network</scene> formed by residues D98 and K121 are of particular importance for ligand recognition.
'''<scene name='86/868179/N-terminus/5'>N terminus:</scene>''' fits in cavity (contact to surrounding residues: N102, Q174, and F178 from TM2 and TM4) indicating a distinct roles in mediating binding of different ligands. However, it is not engaged in GnRH activation of wild-type GnRH1R.
'''<scene name='86/868179/N-terminus/5'>N terminus:</scene>''' fits in cavity (contact to surrounding residues: N102, Q174, and F178 from TM2 and TM4) indicating a distinct roles in mediating binding of different ligands. However, it is not engaged in GnRH activation of wild-type GnRH1R.

Revision as of 22:19, 23 January 2021

This Sandbox is Reserved from 26/11/2020, through 26/11/2021 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1643 through Sandbox Reserved 1664.
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Gonadotropin releasing hormone 1 receptor (GnRHR)

PDB ID 7BR3

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