Replication protein E1

From Proteopedia

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Revision as of 10:18, 27 January 2021

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spinqualitylabelsall models Human papillomavirus 6a regulatory protein E2 complex with DNA (PDB code 2ayg) Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image Function Replication protein E1 (RPE1) is a human papillomavirus (HPV) essential protein which is required for its replication. RPE1 recognizes the HPV origin of replication (ori) with the aid of regulatory protein E2 (RPE2). The resultant helicase complex initiates DNA unwinding to provide the template of progeny DNA synthesis, The HPV ori contains one RPE1 binding site and 2 RPE2 binding sites[1]. RPE2 is found also in bovine papillomavirus (BPV). Disease RPE2 induces apoptosis of its host cells[2]. Structural highlights The complex between HPV6a DBD and 18-bp DNA (PDB code 2ayg) shows the binding of 2 recognition helices of the dimer to 2 successive major grooves of the target DNA making numerous contacts to the DNA backbone phosphate atoms and to its bases[3].

3D structures of regulatory protein E2

Updated on 27-January-2021

Domains: transactivation (TAD) 2-201; DNA-binding (DBD) 286-365

1r8h, 2aye - RPE2 DBD - HPV6a
2ayb, 2ayg - RPE2 DBD + DNA
1r6k, 1r6n - RPE2 TAD + inhibitor - HPV11
1dto - RPE2 TAD - HPV16
2nnu - RPE2 TAD + BRD4 peptide
1by9, 2q79 - RPE2 DBD
3mi7 - RPE2 DBD (mutant)
1r8p, 1zzf - RPE2 DBD - NMR
1tue - RPE1 428-631 (mutant) + RPE2 TAD - HPV18
1qqh - RPE2 TAD
1f9f - RPE2 DBD
1jj4 - RPE2 DBD + DNA
1dhm - RPE2 DBD - HPV31 - NMR
1a7g - RPE2 DBD - HPV32
2jeu, 2jex - RPE2 TAD (mutant) - BPV1
1jjh, 6bus - RPE2 DBD
1dbd - RPE2 DBD - NMR
2bop - RPE2 DBD + DNA

References

1. ↑ Wilson VG, West M, Woytek K, Rangasamy D. Papillomavirus E1 proteins: form, function, and features. Virus Genes. 2002 Jun;24(3):275-90. doi: 10.1023/a:1015336817836. PMID:12086149 doi:http://dx.doi.org/10.1023/a:1015336817836
2. ↑ Singh N, Senapati S, Bose K. Insights into the mechanism of human papillomavirus E2-induced procaspase-8 activation and cell death. Sci Rep. 2016 Feb 24;6:21408. doi: 10.1038/srep21408. PMID:26906543 doi:http://dx.doi.org/10.1038/srep21408
3. ↑ Hooley E, Fairweather V, Clarke AR, Gaston K, Brady RL. The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic Acids Res. 2006;34(14):3897-908. Epub 2006 Aug 12. PMID:16914454 doi:10.1093/nar/gkl466