TRAP dicarboxylate transporter, DctP subunit
From Proteopedia
(New page: <StructureSection load='1ksx' size='340' side='right' caption='Bovine papillomavirus 1 replication protein E1 complex with DNA (PDB code 1ksx)' scene=''> ==Function== '''TRAP dicarbo...) |
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Domains: helicase 301-605; DNA-binding (DBD) 286-365 | Domains: helicase 301-605; DNA-binding (DBD) 286-365 | ||
| + | [[4pfi]] - DctP - ''Marinobacter hydrocarbonoclasticus''<br /> | ||
[[4n6d]] - DsDctP - ''Desulfovibrio salexigens''<br /> | [[4n6d]] - DsDctP - ''Desulfovibrio salexigens''<br /> | ||
[[4n6k]] - DsDctP + diglycerolphosphate<br /> | [[4n6k]] - DsDctP + diglycerolphosphate<br /> | ||
| - | [[4mco]] - DctP + malonate - ''Rhodoferax ferrireducens''<br /> | + | [[4nn3]] - DsDctP + orotate<br /> |
| + | [[4nhb]] - DctP + glycerolphosphate - ''Desulfovibrio desulfuricans''<br /> | ||
| + | [[4ngu]] - DctP + Ala-Ala - ''Desulfovibrio alaskensis''<br /> | ||
| + | [[4xeq]] - DctP + pantoate - ''Desulfovibrio vulgaris''<br /> | ||
| + | [[4mco]], [[4mev]] - DctP + malonate - ''Rhodoferax ferrireducens''<br /> | ||
[[4ovt]] - DctP + fuconate - ''Ochtrobactrum anthropi''<br /> | [[4ovt]] - DctP + fuconate - ''Ochtrobactrum anthropi''<br /> | ||
[[5cm6]] - DctP + pyruvate - ''Pseudoalteromonas atlantica''<br /> | [[5cm6]] - DctP + pyruvate - ''Pseudoalteromonas atlantica''<br /> | ||
| - | [[4n91]] - DctP + | + | [[4n91]] - DctP + glucuronate - ''Anaerococcus prevotii''<br /> |
| + | [[4ovq]] - DctP + glucuronate - ''Roeobacter denitrificans''<br /> | ||
| + | [[4ovr]] - DctP + galacturonate - ''Xanthobacter autotrophicus''<br /> | ||
| + | [[4mig]] - PoDctP + galacturonate - ''Polaromonas''<br /> | ||
[[4n8g]] - DctP + Ala-Ala - ''Chromohalobacter salexigens''<br /> | [[4n8g]] - DctP + Ala-Ala - ''Chromohalobacter salexigens''<br /> | ||
| + | [[4ovs]] - DctP + succinate - ''Sulfurospirillum deleyianum''<br /> | ||
| + | [[4o94]] - DctP + succinate - ''Rhodopseudomonas palustris''<br /> | ||
| + | [[4pfr]] - RsDctP + malate - ''Rhodobacter sphaeroides''<br /> | ||
| + | [[4x8r]] - RsDctP + glucuronate <br /> | ||
| + | [[4xfe]] - DctP + glucuronate - ''Pseudomonas putida''<br /> | ||
| + | [[4o7m]] - DctP + malate - ''Shewanella loihica''<br /> | ||
== References == | == References == | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
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| - | ==Your Heading Here (maybe something like 'Structure')== | ||
| - | <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> | ||
| - | This is a default text for your page '''TRAP dicarboxylate transporter, DctP subunit'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs. | ||
| - | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
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| - | == Function == | ||
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| - | == Disease == | ||
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| - | == Relevance == | ||
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| - | == Structural highlights == | ||
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| - | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | ||
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| - | </StructureSection> | ||
| - | == References == | ||
| - | <references/> | ||
Revision as of 08:22, 31 January 2021
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3D structures of TRAP dicarboxylate transporter, DctP subunit
Updated on 31-January-2021
Domains: helicase 301-605; DNA-binding (DBD) 286-365
4pfi - DctP - Marinobacter hydrocarbonoclasticus
4n6d - DsDctP - Desulfovibrio salexigens
4n6k - DsDctP + diglycerolphosphate
4nn3 - DsDctP + orotate
4nhb - DctP + glycerolphosphate - Desulfovibrio desulfuricans
4ngu - DctP + Ala-Ala - Desulfovibrio alaskensis
4xeq - DctP + pantoate - Desulfovibrio vulgaris
4mco, 4mev - DctP + malonate - Rhodoferax ferrireducens
4ovt - DctP + fuconate - Ochtrobactrum anthropi
5cm6 - DctP + pyruvate - Pseudoalteromonas atlantica
4n91 - DctP + glucuronate - Anaerococcus prevotii
4ovq - DctP + glucuronate - Roeobacter denitrificans
4ovr - DctP + galacturonate - Xanthobacter autotrophicus
4mig - PoDctP + galacturonate - Polaromonas
4n8g - DctP + Ala-Ala - Chromohalobacter salexigens
4ovs - DctP + succinate - Sulfurospirillum deleyianum
4o94 - DctP + succinate - Rhodopseudomonas palustris
4pfr - RsDctP + malate - Rhodobacter sphaeroides
4x8r - RsDctP + glucuronate
4xfe - DctP + glucuronate - Pseudomonas putida
4o7m - DctP + malate - Shewanella loihica
References
- ↑ Wilson VG, West M, Woytek K, Rangasamy D. Papillomavirus E1 proteins: form, function, and features. Virus Genes. 2002 Jun;24(3):275-90. doi: 10.1023/a:1015336817836. PMID:12086149 doi:http://dx.doi.org/10.1023/a:1015336817836
- ↑ Baedyananda F, Chaiwongkot A, Bhattarakosol P. Elevated HPV16 E1 Expression Is Associated with Cervical Cancer Progression. Intervirology. 2017;60(5):171-180. doi: 10.1159/000487048. Epub 2018 Mar 1. PMID:29495005 doi:http://dx.doi.org/10.1159/000487048
- ↑ Enemark EJ, Stenlund A, Joshua-Tor L. Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex. EMBO J. 2002 Mar 15;21(6):1487-96. PMID:11889054 doi:http://dx.doi.org/10.1093/emboj/21.6.1487
