This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2dcj
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1== | ==A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1== | ||
| - | <StructureSection load='2dcj' size='340' side='right' caption='[[2dcj]], [[Resolution|resolution]] 2.24Å' scene=''> | + | <StructureSection load='2dcj' size='340' side='right'caption='[[2dcj]], [[Resolution|resolution]] 2.24Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2dcj]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2dcj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._41m-1 Bacillus sp. 41m-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCJ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2dck|2dck]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2dck|2dck]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynJ ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xynJ ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=98930 Bacillus sp. 41M-1])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcj OCA], [https://pdbe.org/2dcj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcj RCSB], [https://www.ebi.ac.uk/pdbsum/2dcj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcj ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 24: | Line 24: | ||
[[Category: Bacillus sp. 41m-1]] | [[Category: Bacillus sp. 41m-1]] | ||
[[Category: Endo-1,4-beta-xylanase]] | [[Category: Endo-1,4-beta-xylanase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Ihsanawati]] | [[Category: Ihsanawati]] | ||
[[Category: Kumasaka, T]] | [[Category: Kumasaka, T]] | ||
Revision as of 12:00, 3 February 2021
A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1
| |||||||||||
