2cgy

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====
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==STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN==
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<StructureSection load='2cgy' size='340' side='right'caption='[[2cgy]]' scene=''>
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<StructureSection load='2cgy' size='340' side='right'caption='[[2cgy]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2cgy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helix_pomatia Helix pomatia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CGY FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cgy OCA], [https://pdbe.org/2cgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cgy RCSB], [https://www.ebi.ac.uk/pdbsum/2cgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cgy ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ccv|2ccv]], [[2ce6|2ce6]], [[2cgz|2cgz]]</div></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cgy OCA], [https://pdbe.org/2cgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cgy RCSB], [https://www.ebi.ac.uk/pdbsum/2cgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cgy ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cgy ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cgy ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Helix pomatia agglutinin (HPA) is a lectin that has been used extensively in histopathology, since its binding to tissue sections from breast and colon cancers is correlated with the worst prognosis for the patients. The lectin recognizes alpha-d-N-acetylgalactosamine (alphaGalNAc) containing epitopes which are only present in cancer cell lines having a high likelihood to undergo metastasis, such as the HT29 cancer colon cell line. Several breast cancer cell lines have also been shown to be labeled, although IGROV1, an ovarian cancer cell line, is not. Inhibition studies, using GalNAc monosaccharides, are reported here, showing that the labeling is dependent upon the presence of carbohydrate epitopes. The crystal structures of the lectin complexed with two GalNAc containing epitopes associated with cancer, the Tn (alphaGalNAc-Ser) and Forssman (alphaGalNAc1-3GalNAc) antigens, show the lectin's specificity for GalNAc is due to a particular network of hydrogen bonds. A histidine residue makes hydrophobic contact with the aglycon, rationalizing the preference for GalNAc bearing an additional sugar or amino acid in the alpha position. These structures provide the molecular basis for the use of HPA in metastasis research.
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Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin.,Lescar J, Sanchez JF, Audfray A, Coll JL, Breton C, Mitchell EP, Imberty A Glycobiology. 2007 Oct;17(10):1077-83. Epub 2007 Jul 25. PMID:17652409<ref>PMID:17652409</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2cgy" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Agglutinin 3D structures|Agglutinin 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Helix pomatia]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Z-disk]]
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[[Category: Audfray, A]]
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[[Category: Breton, C]]
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[[Category: Chazalet, V]]
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[[Category: Gagnon, J]]
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[[Category: Gautier, C]]
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[[Category: Imberty, A]]
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[[Category: Lescar, J]]
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[[Category: Mitchell, E P]]
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[[Category: Sanchez, J F]]
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[[Category: Lectin]]
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[[Category: Snail]]
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[[Category: Sugar binding protein]]

Revision as of 09:17, 24 February 2021

STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN

PDB ID 2cgy

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