7ned
From Proteopedia
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==Thiourocanate hydratase from Paenibacillus sp. Soil724D2 in complex with cofactor NAD+ and urocanate== | ==Thiourocanate hydratase from Paenibacillus sp. Soil724D2 in complex with cofactor NAD+ and urocanate== | ||
| - | <StructureSection load='7ned' size='340' side='right'caption='[[7ned]]' scene=''> | + | <StructureSection load='7ned' size='340' side='right'caption='[[7ned]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NED FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7ned]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NED FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ned FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ned OCA], [https://pdbe.org/7ned PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ned RCSB], [https://www.ebi.ac.uk/pdbsum/7ned PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ned ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=URO:(2E)-3-(1H-IMIDAZOL-4-YL)ACRYLIC+ACID'>URO</scene></td></tr> |
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Urocanate_hydratase Urocanate hydratase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.49 4.2.1.49] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ned FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ned OCA], [https://pdbe.org/7ned PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ned RCSB], [https://www.ebi.ac.uk/pdbsum/7ned PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ned ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/A0A0Q9KFZ4_9BACL A0A0Q9KFZ4_9BACL]] Catalyzes the conversion of urocanate to 4-imidazolone-5-propionate.[HAMAP-Rule:MF_00577] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Ergothioneine is a histidine-derived sulfur metabolite that is biosynthesized by bacteria and fungi. Plants and animals absorb ergothioneine as a micronutrient from their environment or nutrition. Several different mechanisms of microbial ergothioneine production have been described in the past ten years. Much less is known about the genetic and structural basis for ergothioneine catabolism. In this report, we describe the in vitro reconstitution of a five-step pathway that degrades ergothioneine to l-glutamate, trimethylamine, hydrogen sulfide, carbon dioxide, and ammonia. The first two steps are catalyzed by the two enzymes ergothionase and thiourocanate hydratase. These enzymes are closely related to the first two enzymes in histidine catabolism. However, the crystal structure of thiourocanate hydratase from the firmicute Paenibacillus sp. reveals specific structural features that strictly differentiate the activity of this enzyme from that of urocanate hydratases. The final two steps are catalyzed by metal-dependent hydrolases that share most homology with the last two enzymes in uracil catabolism. The early and late part of this pathway are connected by an entirely new enzyme type that catalyzes desulfurization of a thiohydantoin intermediate. Homologous enzymes are encoded in many soil-dwelling firmicutes and proteobacteria, suggesting that bacterial activity may have a significant impact on the environmental availability of ergothioneine. | ||
| + | |||
| + | In Vitro Reconstitution of a Five-Step Pathway for Bacterial Ergothioneine Catabolism.,Beliaeva MA, Leisinger F, Seebeck FP ACS Chem Biol. 2021 Feb 19;16(2):397-403. doi: 10.1021/acschembio.0c00968. Epub, 2021 Feb 5. PMID:33544568<ref>PMID:33544568</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7ned" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Leisinger F]] | + | [[Category: Urocanate hydratase]] |
| - | [[Category: Seebeck | + | [[Category: Leisinger, F]] |
| + | [[Category: Seebeck, F P]] | ||
| + | [[Category: Ergothioneine catabolism]] | ||
| + | [[Category: Lyase]] | ||
| + | [[Category: Thiourocanate hydratase]] | ||
Revision as of 15:05, 3 March 2021
Thiourocanate hydratase from Paenibacillus sp. Soil724D2 in complex with cofactor NAD+ and urocanate
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