1oge

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==The Structure of Bacillus subtilis RbsD complexed with Ribose 5-phosphate==
==The Structure of Bacillus subtilis RbsD complexed with Ribose 5-phosphate==
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<StructureSection load='1oge' size='340' side='right'caption='[[1oge]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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<StructureSection load='1oge' size='340' side='right'caption='[[1oge]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1oge]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OGE FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OGE FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=RP5:5-O-PHOSPHONO-BETA-D-RIBOFURANOSE'>RP5</scene></td></tr>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oge OCA], [https://pdbe.org/1oge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oge RCSB], [https://www.ebi.ac.uk/pdbsum/1oge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oge ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ogc|1ogc]], [[1ogd|1ogd]], [[1ogf|1ogf]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oge OCA], [http://pdbe.org/1oge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oge RCSB], [http://www.ebi.ac.uk/pdbsum/1oge PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oge ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
 
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[[http://www.uniprot.org/uniprot/RBSD_BACSU RBSD_BACSU]] Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose (By similarity).[HAMAP-Rule:MF_01661]
 
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oge ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oge ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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RbsD is the only protein whose biochemical function is unknown among the six gene products of the rbs operon involved in the active transport of ribose. FucU, a paralogue of RbsD conserved from bacteria to human, is also the only protein whose function is unknown among the seven gene products of the l-fucose regulon. Here we report the crystal structures of Bacillus subtilis RbsD, which reveals a novel decameric toroidal assembly of the protein. Nuclear magnetic resonance and other studies on RbsD reveal that the intersubunit cleft of the protein binds specific forms of d-ribose, but it does not have an enzyme activity toward the sugar. Likewise, FucU binds l-fucose but lacks an enzyme activity toward this sugar. We conclude that RbsD and FucU are cytoplasmic sugar-binding proteins, a novel class of proteins whose functional role may lie in helping influx of the sugar substrates.
 
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Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture.,Kim MS, Shin J, Lee W, Lee HS, Oh BH J Biol Chem. 2003 Jul 25;278(30):28173-80. Epub 2003 May 8. PMID:12738765<ref>PMID:12738765</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1oge" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
*[[Ribose-binding protein|Ribose-binding protein]]
*[[Ribose-binding protein|Ribose-binding protein]]
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus subtilis]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Kim, M S]]
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[[Category: Kim M-S]]
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[[Category: Oh, B H]]
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[[Category: Oh B-H]]
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[[Category: Ribose 5-phosphate]]
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[[Category: Sugar transport]]
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[[Category: Transport]]
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Revision as of 15:23, 3 March 2021

The Structure of Bacillus subtilis RbsD complexed with Ribose 5-phosphate

PDB ID 1oge

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