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Amylase 3D structures
From Proteopedia
(Difference between revisions)
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** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br /> | ** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''<br /> | ||
** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br /> | ** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''<br /> | ||
| - | ** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''<br /> | + | ** [[3kwx]], [[2guy]], [[6xsj]], [[6xsv]] – AoAAM – ''Aspergilluys oryzae''<br /> |
** [[2wpg]] – AAM – ''Xanthomonas campestris''<br /> | ** [[2wpg]] – AAM – ''Xanthomonas campestris''<br /> | ||
** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br /> | ** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''<br /> | ||
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** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant) | ** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant) | ||
** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br /> | ** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''<br /> | ||
| - | ** [[1ob0]], [[1bli]] - BlAAM (mutant) | + | **[[6toy]] - BlAAM – ''Bacillus licheniformis''<br /> |
| + | ** [[1ob0]], [[1bli]], [[6tp2]] - BlAAM (mutant) <br /> | ||
** [[1vjs]] – BlAAM precursor<br /> | ** [[1vjs]] – BlAAM precursor<br /> | ||
** [[1bpl]] – BlAAM<br /> | ** [[1bpl]] – BlAAM<br /> | ||
| Line 48: | Line 49: | ||
**[[6sau]] – AAM – ''Cordyceps farinosa''<br /> | **[[6sau]] – AAM – ''Cordyceps farinosa''<br /> | ||
**[[6sav]] – AAM – ''Rhizomucor pusillus''<br /> | **[[6sav]] – AAM – ''Rhizomucor pusillus''<br /> | ||
| + | **[[6m4k]] – EfAAM – ''Eisenia fetida''<br /> | ||
| + | **[[6m4l]], [[6m4m]] – EfAAM (mutant) <br /> | ||
** ''AAM saccharide complexes'' | ** ''AAM saccharide complexes'' | ||
| Line 87: | Line 90: | ||
*** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br /> | *** [[3gly]], [[1agm]], [[1glm]] – AaAAM + saccharide<br /> | ||
*** [[5a2c]], [[5a2b]] - AnAAM + maltose <br /> | *** [[5a2c]], [[5a2b]] - AnAAM + maltose <br /> | ||
| - | **[[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br /> | + | *** [[6gya]] - AAM + a-glucose + b-glucose - ''Alicyclosbacillus''<br /> |
*** [[3n92]], [[3n98]] – TkAAM + saccharide<br /> | *** [[3n92]], [[3n98]] – TkAAM + saccharide<br /> | ||
| + | *** [[6toz]], [[6tp0]], [[6tp1]] - BlAAM + saccharide<br /> | ||
** ''AAM other complexes'' | ** ''AAM other complexes'' | ||
| Line 100: | Line 104: | ||
*Human pancreatic α-amylase | *Human pancreatic α-amylase | ||
| - | **[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]] – hAAM – human<br /> | + | **[[3ij7]], [[1bsi]], [[1hny]], [[4x9y]], [[5u3a]], [[6z8l]] – hAAM – human<br /> |
**[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br /> | **[[1xgz]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], 2cpu]] - hAAM (mutant) <br /> | ||
**[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br /> | **[[3ij8]], [[3ij9]] – hAAM catalytic intermediate<br /> | ||
| Line 125: | Line 129: | ||
**[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br /> | **[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]] - hAAM (mutant) + saccharide<br /> | ||
**[[3dhp]] - hAAM (mutant) + acarbose<br /> | **[[3dhp]] - hAAM (mutant) + acarbose<br /> | ||
| - | |||
* Pullulanase α-amylase | * Pullulanase α-amylase | ||
| + | |||
** [[2wan]] – AAM – ''Bacillus acidopullululyticus'' | ** [[2wan]] – AAM – ''Bacillus acidopullululyticus'' | ||
** [[2fgz]] – KaAAM – ''Klebsiella aerogenes'' | ** [[2fgz]] – KaAAM – ''Klebsiella aerogenes'' | ||
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** ''Pullulanase α-amylase binary complexes'' | ** ''Pullulanase α-amylase binary complexes'' | ||
| + | |||
*** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br /> | *** [[2fh6]], [[2fh8]], [[2fhb]], [[2fhc]], [[2fhf]] - KaAAM + saccharide<br /> | ||
*** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae'' | *** [[3fax]] - AAM + saccharide – ''Streptococcus agalactiae'' | ||
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* Neopullulanase α-amylase | * Neopullulanase α-amylase | ||
| + | |||
** [[4aef]] – AAM – ''Pyrococcus furiosus''<br /> | ** [[4aef]] – AAM – ''Pyrococcus furiosus''<br /> | ||
** [[1j0h]] – BsAAM<br /> | ** [[1j0h]] – BsAAM<br /> | ||
| Line 151: | Line 157: | ||
* β-amylase | * β-amylase | ||
| - | ** [[2xfr]] – bBAM | + | |
| - | ** [[1wdp]] – sBAM – soybean | + | ** [[2xfr]] – bBAM<br /> |
| - | ** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant) | + | ** [[1wdp]] – sBAM – soybean<br /> |
| + | ** [[2dqx]], [[1uko]], [[1ukp]] – sBAM (mutant)<br /> | ||
** [[1fa2]] - BAM + saccharide – Sweet potato<br /> | ** [[1fa2]] - BAM + saccharide – Sweet potato<br /> | ||
**[[6ger]] - BAM – wheat<br /> | **[[6ger]] - BAM – wheat<br /> | ||
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** ''β-amylase binary complexes'' | ** ''β-amylase binary complexes'' | ||
| + | |||
*** [[2xff]] – bBAM + acarbose<br /> | *** [[2xff]] – bBAM + acarbose<br /> | ||
*** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br /> | *** [[2xfy]], [[2xg9]], [[2xgb]], [[2xgi]] – bBAM + inhibitor<br /> | ||
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*** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br /> | *** [[1j0y]], [[1j0z]], [[1j10]], [[1j11]], [[1j12]], [[1j18]], [[1b9z]] - BcBAM + saccharide<br /> | ||
*** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br /> | *** [[1veo]], [[1vep]], [[1itc]] - BcBAM (mutant) + saccharide<br /> | ||
| - | **[[1fa2]], [[5wqu]] - SpBAM + saccharide <br /> | + | *** [[1fa2]], [[5wqu]] - SpBAM + saccharide <br /> |
* γ-amylase | * γ-amylase | ||
| + | |||
** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum'' | ** [[1lf6]] – TtGAM – ''Thermoanaerobacterium thermosaccharolyticum'' | ||
** [[1lf9]] - TtGAM + acarbose<br /> | ** [[1lf9]] - TtGAM + acarbose<br /> | ||
* β/α-amylase | * β/α-amylase | ||
| + | |||
** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br /> | ** [[2laa]], [[2lab]] – PpBAAM – ''Paenibacillus polymyxa'' - NMR<br /> | ||
** [[3voc]] – PpBAAM<br /> | ** [[3voc]] – PpBAAM<br /> | ||
* Maltohexaose-producing amylase | * Maltohexaose-producing amylase | ||
| + | |||
** [[1wp6]] - BacMAM | ** [[1wp6]] - BacMAM | ||
**[[1wpc]] – BacMAM + saccharide<br /> | **[[1wpc]] – BacMAM + saccharide<br /> | ||
* Maltogenic amylase | * Maltogenic amylase | ||
| + | |||
** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.'' | ** [[1gvi]], [[1sma]] – MAM – ''Thermus sp.'' | ||
* Taka amylase | * Taka amylase | ||
| - | ** [[2taa]], [[3vx0]], [[3vx1]] – AoTAM | + | |
| - | ** [[7taa]] – AoTAM + acarbose | + | ** [[2taa]], [[3vx0]], [[3vx1]]< [[6yq7]] – AoTAM <br /> |
| + | ** [[7taa]] – AoTAM + acarbose<br /> | ||
| + | ** [[6yq9]], [[6yqa]], [[6yqb]], [[6yqc]] – AoTAM + inhibitor<br /> | ||
}} | }} | ||
[[Category: Topic Page]] | [[Category: Topic Page]] | ||
Revision as of 10:48, 18 March 2021
3D structures of Amylase
Updated on 18-March-2021
