This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i2o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:26, 24 March 2021) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of an eIF4G-like Protein from Danio rerio==
==Crystal Structure of an eIF4G-like Protein from Danio rerio==
-
<StructureSection load='2i2o' size='340' side='right' caption='[[2i2o]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
+
<StructureSection load='2i2o' size='340' side='right'caption='[[2i2o]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2i2o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I2O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2I2O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2i2o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brachidanio_rerio Brachidanio rerio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I2O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dr.38751 (BC090306) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dr.38751 (BC090306) ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7955 Brachidanio rerio])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i2o OCA], [http://pdbe.org/2i2o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2i2o RCSB], [http://www.ebi.ac.uk/pdbsum/2i2o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2i2o ProSAT], [http://www.topsan.org/Proteins/CESG/2i2o TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i2o OCA], [https://pdbe.org/2i2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i2o RCSB], [https://www.ebi.ac.uk/pdbsum/2i2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i2o ProSAT], [https://www.topsan.org/Proteins/CESG/2i2o TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/M4GDB_DANRE M4GDB_DANRE]] Functions in replication-dependent translation of histone mRNAs which differ from other eukaryotic mRNAs in that they do not end with a poly-A tail but a stem-loop. May participate in circularizing those mRNAs specifically enhancing their translation (By similarity).
+
[[https://www.uniprot.org/uniprot/M4GDB_DANRE M4GDB_DANRE]] Functions in replication-dependent translation of histone mRNAs which differ from other eukaryotic mRNAs in that they do not end with a poly-A tail but a stem-loop. May participate in circularizing those mRNAs specifically enhancing their translation (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 24: Line 24:
</StructureSection>
</StructureSection>
[[Category: Brachidanio rerio]]
[[Category: Brachidanio rerio]]
 +
[[Category: Large Structures]]
[[Category: Bingman, C A]]
[[Category: Bingman, C A]]
[[Category: Bitto, E]]
[[Category: Bitto, E]]

Current revision

Crystal Structure of an eIF4G-like Protein from Danio rerio

PDB ID 2i2o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools