Sandbox Reserved 1673

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 10: Line 10:
== Relevance ==
== Relevance ==
-
Alginate lyase has two domains with Cyclic – C2 symmetry. Its secondary structure is roughly 14% helices and 44% beta strands. Both domains each consist of 7 helices and 15 beta strands with one disulfide bridge. The most <scene name='87/873235/Important_residues_view/1'>important residues</scene> for binding substrate as well as those involved in catalysis all lie on beta strands in both domains.
 
== Structural highlights ==
== Structural highlights ==
 +
Alginate lyase has two domains with Cyclic – C2 symmetry. Its secondary structure is roughly 14% helices and 44% beta strands. Both domains each consist of 7 helices and 15 beta strands with one disulfide bridge. The most <scene name='87/873235/Important_residues_view/1'>important residues</scene> for binding substrate as well as those involved in catalysis all lie on beta strands in both domains.
 +
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

Revision as of 02:51, 29 March 2021

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Your Heading Here (maybe something like 'Structure')

Caption for this structure

Drag the structure with the mouse to rotate

References

[3]

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
  3. ↑ Xu F, Chen XL, Sun XH, Dong F, Li CY, Li PY, Ding H, Chen Y, Zhang YZ, Wang P. Structural and molecular basis for the substrate positioning mechanism of a new PL7 subfamily alginate lyase from the Arctic. J Biol Chem. 2020 Sep 23. pii: RA120.015106. doi: 10.1074/jbc.RA120.015106. PMID:32967968 doi:http://dx.doi.org/10.1074/jbc.RA120.015106
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1673"
Personal tools