User:Kaitlyn Roberts/Sandbox 2
From Proteopedia
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(New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...) |
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== Introduction == | == Introduction == | ||
- | + | Sterol O-acyltransferase(SOAT), otherwise known as Acyl-coenzyme A:cholesterol acyltransferase(ACAT), is the founding member of the membrane-bound O-acyl transferase(MBOAT) enzyme family. MBOAT enzymes transfer acyl chains onto various substrates, including lipids, peptides, and small proteins. There are 11 MBOAT family members in humans, which participate in a variety of physiological processes. | |
- | + | SOAT specifically catalyzes the esterification of cholesterol for efficient storage within the cell. Cholesterol is a membrane lipid that plays an essential role in maintaining the fluidity and integrity of the membrane, and cholesteryl esters are formed when an excess of cholesterol is present. | |
== Structure == | == Structure == | ||
- | + | The overall structure of the enzyme is a tetramer structure or a dimer of dimers. The functional building block of SOAT is a dimer which is made up of two identical monomer structures. The residues that form the dimer interface are mostly hydrophobic and interact with each other in a shape-complementary manner. Mutating residues within the dimer interface reduced the dimers to monomer fractions, indicating that the dimeric architecture is important for the activity of the enzyme. The dimerization of SOAT is mainly mediated by extensive van der Waals interactions between TM1 in one protomer and the lumenal segment of TM6 and the cytosolic segment of TM9 in the other. TM1, TM5, TM6 and TM9 from the two protomers enclose a deep hydrophobic pocket that is open to the lumenal side. Numerous hydrophobic residues on TM6 and TM9 from one protomer contact those on TM1 from the other protomer. On the intracellular side, hydrophobic residues on IH1 of each protomer interact with each other to stabilize the dimer. | |
+ | |||
+ | === Active Site === | ||
+ | The active site of this enzyme has 3 main residues that are essential for the catalytic activity of SOAT. H460, W420, and N421 work to stabilize the substrates as well as serve other roles in the mechanism of action. Many acyl transferases utilize histidine as the catalytic base. The conserved H460 is crucial for SOAT activity and is the putative catalytic residue. A single point mutation of the histidine at position 460 to alanine resulted in the complete abolition of enzymatic activity indicating its essential role in the mechanism. Along with H460, there are several other residues in the central cavity that are important for SOAT function. Most residues aligning the interior of the reaction chamber are highly conserved indicating that the local environment in the central cavity is important for the catalytic reaction. | ||
+ | |||
+ | === Tunnel System === | ||
+ | |||
+ | == Catalytic Mechanism == | ||
+ | The distal-most nitrogen on H460 acts as a base catalyst to deprotonate the hydroxyl group of a cholesterol molecule. This leaves the cholesterol oxygen with a negative charge, making it a good nucleophile. The nucleophilic oxygen attacks the Acyl CoA substrate at the carbonyl carbon, kicking electron density up to the carbonyl oxygen. Shown in brackets, the transition state is stabilized by N421 and newly protonated H460. | ||
+ | From the transition state, excess electron density on the carbonyl oxygen is collapsed back into a double bond. This causes the bond between the carbonyl carbon and sulfur to break, shifting electron density to the sulfur atom. To complete the mechanism, the negatively charged sulfur would reclaim the hydrogen from protonated H460. Acyl CoA would exit the active site as a leaving group, leaving its R group attached to cholesterol in the form of a cholesterol ester. | ||
+ | It should be noted that this mechanism is largely hypothesized. Further analysis is needed to confirm the proposed steps. Additionally, the role of W420 is unclear. Mutations of W420A rendered the SOAT enzyme nonfunctional, indicating that it must be essential for catalytic activity. However, its role in the mechanism, direct or indirect, is unknown at this time. | ||
- | = Active Site = | ||
== Function == | == Function == | ||
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== Disease == | == Disease == | ||
- | == Relevance == | + | == Biological Relevance == |
- | + | SOAT can actually use multiple sterols as substrates and activators. Because of its functional importance, SOAT is a potential drug target for Alzheimer’s disease, atherosclerosis, and several types of cancers. | |
- | + | ||
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. | This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes. |
Revision as of 20:05, 5 April 2021
Your Heading Here (maybe something like 'Structure')
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644