User:Emily Royston/Sandbox 2
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< User:Emily Royston(Difference between revisions)
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| + | =Desaturation of Fatty Stearoyl-CoA by SCD= | ||
| - | =Stearoyl-CoA Desaturase | + | <StructureSection load='4YMK' size='350' frame='true' side='right' caption='Stearoyl-CoA Desaturase, SCD' scene='87/877504/Baseline_structure/2'> |
| - | + | ==Introduction== | |
| + | ===Overview=== | ||
| + | [https://en.wikipedia.org/wiki/Stearoyl-CoA_desaturase-1 Stearoyl-CoA Desaturase] (SCD) is an integral membrane protein located in the endoplasmic reticulum and is conserved across all eukaryotes (Bai et al., 2015). SCD-1 is expressed in Mus musculus. The human homolog, SCD1, shares 85% sequence identity with all four SCD’s found in M. musculus (Scd1-Scd4). | ||
| - | + | Stearoyl-CoA Desaturase is an enzyme which speeds up desaturation of a double bond within a fatty acid hydrocarbon chain. The addition of a double bond is necessary for the biosynthesis of monounsaturated fatty acids such as: cholesterol, phospholipids, and triglycerides. SCD-1 is able to interact with two different substrates: stearoyl-CoA or palmitoyl-CoA. Figure 1 represents the <scene name='87/877504/Baseline_structure/1'>depth of substrate tunnel</scene> that stearoyl-CoA substrate fits in to interact with the enzyme. Within the enzyme there exists a di-iron complex that is stabilized by <scene name='87/877517/Histidine1_emroy/4'>9 histidine residues</scene>. SCD specifically catalyzes the C9-C10-cis desaturation of fatty stearoyl-CoA substrates from saturated fatty acids that come from an organism’s diet (Paton and Ntambi, 2009). Functioning SCD creates the balance between the accumulation and use of fats in the body. The enzyme plays a critical role in fatty acid metabolism pathways. Inhibition of SCD leads to possible treatment of metabolic disease and cancer. | |
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| - | <scene name='87/877504/Baseline_structure/1'> | + | |
| - | == | + | ==Structure== |
| - | = | + | <scene name='87/877504/Tm_caption_1/1'>Mushroom-like Structure of SCD</scene> |
| - | === | + | |
| - | === | + | <scene name='87/877504/Trp_thr_creation_of_kink/1'>Creation of C9-C10 Double Bond</scene> |
| + | ===Binding Pocket=== | ||
| + | ===Metal Cations=== | ||
==Function== | ==Function== | ||
| - | + | Palmitoyl and Stearoyl CoA are substrates of SCD1. These substrates enter the hydrophobic V-shaped tunnel inside SCD1. The tunnel is regioselective and stereospecific such that the substrate’s binding site lines up C9 and C10 at the kink of the V-shaped tunnel with the di-iron center that consists of an oxygen molecule bound to one of the metals. The kink is formed by two conserved Trp149 and Thr257 residues. It is at this kink of the tunnel that desaturation occurs. Hydrogens are removed at the C9, then C10 to introduce the double bond through mechanism (link to mechanism section?). Precise placement of the C9-C10 atoms near the two iron metals provides the tunnel with regioselectivity and stereospecificity, stabilizing the substrate for oxygen to extract the hydrogens in order to form the double bond. | |
| - | + | ||
| - | + | ===Desaturation Mechanism=== | |
| + | <scene name='87/877504/Zn_h_bond_stabilization_2/7'>C9-C10 Double Bond</scene> | ||
| - | + | ===Release of Product=== | |
==Related Disease== | ==Related Disease== | ||
Current revision
Desaturation of Fatty Stearoyl-CoA by SCD
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References
Student Contributors
- Brianna M. Avery
- William J. Harris III
- Emily M. Royston
