We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.
User:Sarah Maarouf/Sandbox 1
From Proteopedia
(Difference between revisions)
| Line 23: | Line 23: | ||
==== N-terminal α/β-hydrolase domain ==== | ==== N-terminal α/β-hydrolase domain ==== | ||
The <scene name='87/877554/N-terminal_domain/3'>N-terminal domain</scene> contains the <scene name='87/877554/Active_site_residues/10'>catalytic triad</scene> by which this enzyme catalyzes the hydrolysis of triglycerides, these residues are Ser159, Asp183, and His268, and also houses the <scene name='87/877554/Oxyanion_hole/9'>oxyanion hole</scene> to stabilize the transition state of the substrate through the backbone amides of Trp82 and Leu160. The N-terminal domain includes a <scene name='87/877554/Calcium_ion_coordination_sites/4'>calcium ion that is coordinated by a number of residues</scene> which has been shown to have mutations that may impact LPL enzyme activity. The lid region of the N-terminal domain was imaged in an open conformation, meaning it is not blocking the active site. The <scene name='87/877554/Lid_region/6'>lid region</scene> consists of 2 short α-helices connected by a loop, extending away from the protein. <ref name="Arora">PMID:31072929</ref> This open conformation allows for many surface-exposed hydrophobic residues (valines,isoleucines, and leucines) to create a hydrophobic patch on the surface of LPL. The lid region helps to control for the entry of lipid substrates into the active site cleft. | The <scene name='87/877554/N-terminal_domain/3'>N-terminal domain</scene> contains the <scene name='87/877554/Active_site_residues/10'>catalytic triad</scene> by which this enzyme catalyzes the hydrolysis of triglycerides, these residues are Ser159, Asp183, and His268, and also houses the <scene name='87/877554/Oxyanion_hole/9'>oxyanion hole</scene> to stabilize the transition state of the substrate through the backbone amides of Trp82 and Leu160. The N-terminal domain includes a <scene name='87/877554/Calcium_ion_coordination_sites/4'>calcium ion that is coordinated by a number of residues</scene> which has been shown to have mutations that may impact LPL enzyme activity. The lid region of the N-terminal domain was imaged in an open conformation, meaning it is not blocking the active site. The <scene name='87/877554/Lid_region/6'>lid region</scene> consists of 2 short α-helices connected by a loop, extending away from the protein. <ref name="Arora">PMID:31072929</ref> This open conformation allows for many surface-exposed hydrophobic residues (valines,isoleucines, and leucines) to create a hydrophobic patch on the surface of LPL. The lid region helps to control for the entry of lipid substrates into the active site cleft. | ||
| - | |||
==== C-terminal β-barrel domain ==== | ==== C-terminal β-barrel domain ==== | ||
| Line 37: | Line 36: | ||
[[Image:Mechanismlpl.jpg|650px|left]] | [[Image:Mechanismlpl.jpg|650px|left]] | ||
| - | |||
| Line 77: | Line 75: | ||
The active site consists of a catalytic triad Ser159, Asp183 and His268 that go through the [https://en.wikipedia.org/wiki/Serine_protease#Chymotrypsin-like serine protease mechanism of action]. The hallmark of this mechanism is the proton shuttle between the three residues that increases the nucleophilicity of the serine residue. Serine is then able to make the nucleophilic attack on the the carbonyl carbon of the scissile peptide bond of the substrate. During catalysis, an ordered mechanism occurs in which several intermediates are generated. The catalysis of the peptide cleavage can be seen as a ping-pong catalysis, in which the triglyceride binds, and the diglyceride is released. Then the second substrate, water, binds and the second product, the fatty acid, is released. | The active site consists of a catalytic triad Ser159, Asp183 and His268 that go through the [https://en.wikipedia.org/wiki/Serine_protease#Chymotrypsin-like serine protease mechanism of action]. The hallmark of this mechanism is the proton shuttle between the three residues that increases the nucleophilicity of the serine residue. Serine is then able to make the nucleophilic attack on the the carbonyl carbon of the scissile peptide bond of the substrate. During catalysis, an ordered mechanism occurs in which several intermediates are generated. The catalysis of the peptide cleavage can be seen as a ping-pong catalysis, in which the triglyceride binds, and the diglyceride is released. Then the second substrate, water, binds and the second product, the fatty acid, is released. | ||
| - | |||
| - | |||
| - | |||
| - | <ref name="Birrane">PMID:30559189</ref> | ||
| - | |||
| - | <ref name="Arora">PMID:31072929</ref> | ||
| - | |||
| - | <ref name="Olivecrona">PMID:27031275</ref> | ||
| - | |||
| - | <ref name="Fong">PMID:27185325</ref> | ||
| - | |||
| - | |||
Revision as of 17:30, 13 April 2021
H. sapiens Lipoprotein Lipase in complex with GPIHBP1 and triglyceride metabolism
| |||||||||||
References
- ↑ 1.0 1.1 1.2 Arora R, Nimonkar AV, Baird D, Wang C, Chiu CH, Horton PA, Hanrahan S, Cubbon R, Weldon S, Tschantz WR, Mueller S, Brunner R, Lehr P, Meier P, Ottl J, Voznesensky A, Pandey P, Smith TM, Stojanovic A, Flyer A, Benson TE, Romanowski MJ, Trauger JW. Structure of lipoprotein lipase in complex with GPIHBP1. Proc Natl Acad Sci U S A. 2019 May 21;116(21):10360-10365. doi:, 10.1073/pnas.1820171116. Epub 2019 May 9. PMID:31072929 doi:http://dx.doi.org/10.1073/pnas.1820171116
- ↑ Olivecrona G. Role of lipoprotein lipase in lipid metabolism. Curr Opin Lipidol. 2016 Jun;27(3):233-41. doi: 10.1097/MOL.0000000000000297. PMID:27031275 doi:http://dx.doi.org/10.1097/MOL.0000000000000297
- ↑ 3.0 3.1 Birrane G, Beigneux AP, Dwyer B, Strack-Logue B, Kristensen KK, Francone OL, Fong LG, Mertens HDT, Pan CQ, Ploug M, Young SG, Meiyappan M. Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis. Proc Natl Acad Sci U S A. 2018 Dec 17. pii: 1817984116. doi:, 10.1073/pnas.1817984116. PMID:30559189 doi:http://dx.doi.org/10.1073/pnas.1817984116
Student Contributors
- Aniyah Coles
- Sarah Maarouf
- Audrey Marjamaa
