6xu3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==(R)-selective amine transaminase from Shinella sp.==
==(R)-selective amine transaminase from Shinella sp.==
-
<StructureSection load='6xu3' size='340' side='right'caption='[[6xu3]]' scene=''>
+
<StructureSection load='6xu3' size='340' side='right'caption='[[6xu3]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XU3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6XU3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6xu3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shinella_sp._j1-6 Shinella sp. j1-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XU3 FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xu3 OCA], [http://pdbe.org/6xu3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xu3 RCSB], [http://www.ebi.ac.uk/pdbsum/6xu3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xu3 ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GAB:3-AMINOBENZOIC+ACID'>GAB</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PLG:N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]'>PLG</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EXZ48_21850 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2527671 Shinella sp. J1-6])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xu3 OCA], [https://pdbe.org/6xu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xu3 RCSB], [https://www.ebi.ac.uk/pdbsum/6xu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xu3 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/A0A4Q8MG35_9RHIZ A0A4Q8MG35_9RHIZ]] Acts on leucine, isoleucine and valine.[ARBA:ARBA00003109]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Amine transaminases (ATAs) are used to synthesize enantiomerically pure amines, which are building blocks for pharmaceuticals and agrochemicals. (R) -selective ATAs belong to the fold type IV PLP dependent enzymes and different sequence-, structure- and substrate scope-based features have been identified in the past decade. However, our knowledge is still restricted due to the limited number of characterized (R) -ATAs with additional bias towards fungal origin. We aimed to expand the toolbox of (R) -ATAs and contribute to the understanding of this enzyme subfamily. We identified and characterized four new (R) -ATAs. The ATA from Exophiala sideris contains a motif characteristic for D-ATAs, which was previously believed to be a disqualifying factor for (R) -ATA activity. The crystal structure of the ATA from Shinella is the first from a gram-negative bacterium. The ATAs from Pseudonocardia acaciae and Tetrasphaera japonica are the first characterized (R) -ATAs with a shortened/missing N-terminal helix. The active site charges vary significantly between the new and known ATAs correlating with their diverging substrate scope.
 +
 +
Expanding the Toolbox of (R)-selective Amine Transaminases by Identification and Characterization of new Members.,Telzerow A, Paris J, Hakansson M, Gonzalez-Sabin J, Rios-Lombardia N, Groger H, Moris F, Schurmann M, Schwab H, Steiner K Chembiochem. 2020 Nov 26. doi: 10.1002/cbic.202000692. PMID:33242357<ref>PMID:33242357</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6xu3" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hakansson M]]
+
[[Category: Shinella sp. j1-6]]
-
[[Category: Steiner K]]
+
[[Category: Hakansson, M]]
-
[[Category: Telzerow A]]
+
[[Category: Steiner, K]]
 +
[[Category: Telzerow, A]]
 +
[[Category: Amine transaminase]]
 +
[[Category: Fold iv plp-dependent enzyme]]
 +
[[Category: Transferase]]

Revision as of 06:54, 14 April 2021

(R)-selective amine transaminase from Shinella sp.

PDB ID 6xu3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools