Sandbox Reserved 1678

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 15: Line 15:
Alginate lyase is a <scene name='87/873240/Dimer/2'>dimer</scene> (contains two domains). One domain is shown in blue, and the other is in green. Being in a dimer form allows the protein to adapt to the seawater salinity of the Arctic ocean from which is originates. The protein's tertiary structure is held together by many hydrogen bonds and some cation-pi interactions. Each domain of the protein is made of <scene name='87/873240/Alpha_helices_and_beta_sheets/1'>6 alpha helices and 15 beta sheets</scene>. The alpha helices are shown in yellow, and the beta sheets are shown in pink.
Alginate lyase is a <scene name='87/873240/Dimer/2'>dimer</scene> (contains two domains). One domain is shown in blue, and the other is in green. Being in a dimer form allows the protein to adapt to the seawater salinity of the Arctic ocean from which is originates. The protein's tertiary structure is held together by many hydrogen bonds and some cation-pi interactions. Each domain of the protein is made of <scene name='87/873240/Alpha_helices_and_beta_sheets/1'>6 alpha helices and 15 beta sheets</scene>. The alpha helices are shown in yellow, and the beta sheets are shown in pink.
-
A space-fill view of the protein is shown <scene name='87/873240/Spacefill_cleft_and_substrate/1'>here</scene>, and the long cleft can be seen where the substrate binds to the active site. The cleft is a long valley-like groove for the long-chained substrate to sit in.
+
A space-fill view of the protein is shown <scene name='87/873240/Spacefill_cleft_and_substrate/1'>here</scene>, and the long cleft in the blue domain can be seen where the substrate binds to the active site. The cleft is a long valley-like groove for the long-chained sugar substrate to sit in. The space-fill view also clearly displays the two domains of the protein.
Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>
Alginate lyase contains a main ligand that is an oligosaccharide: <scene name='87/873240/7c8f_view_2/1'>beta-D-mannopyranuronic acid-(1,4)-beta-D-mannopyranuronic acid.</scene>

Revision as of 03:33, 16 April 2021

This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Alginate Lyase (AlyC3)

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

[1]

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1678"
Personal tools