Sandbox Reserved 1668
From Proteopedia
(Difference between revisions)
| Line 12: | Line 12: | ||
== Important amino acids== | == Important amino acids== | ||
| - | <scene name='87/873230/Ligands/1'>ligands</scene> | + | Here is a <scene name='87/873230/Ligands/1'>ligands</scene> view, with all of the ligands visible. This is a <scene name='87/873230/Ligands_zoomed/1'>zoomed in</scene> picture of one of the THFA ligands on the PYCR1 protein. THFA interacts with the amino acids Serine 233, Valine 231, Threonine 238, and Alanine 237 from the PYCR1 protein. |
== Structural highlights == | == Structural highlights == | ||
| - | There are 5 domains. Among all of them, there is about 50% alpha helices, 40% beta sheets, and about 10% other structures. Alpha helices, beta sheets, and some of the other structures all are bonded to the different ligands. Some of the ligands bond to H2O “outside of the loop” | + | There are 5 domains. Among all of them, there is about 50% alpha helices, 40% beta sheets, and about 10% other structures. Alpha helices, beta sheets, and some of the other structures all are bonded to the different ligands. Some of the ligands bond to H2O “outside of the loop”. |
| + | Here is a view of the <scene name='87/873230/Alpha_helices/1'>alpha helices</scene>highlighted in green, and this is a view of the <scene name='87/873230/Beta_sheets/1'>beta sheets</scene> highlighted in pink. | ||
| + | This is a view of domain E's <scene name='87/873230/Tertiary_structure/2'>tertiary structure</scene>. | ||
| + | |||
== Other important features == | == Other important features == | ||
Revision as of 23:01, 18 April 2021
| This Sandbox is Reserved from 01/25/2021 through 04/30/2021 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1665 through Sandbox Reserved 1682. |
To get started:
More help: Help:Editing |
Your Heading Here (maybe something like 'Structure')
| |||||||||||
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
