User:Madison Unger/Sandbox 1
From Proteopedia
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=== Overall Structure === | === Overall Structure === | ||
ACAT is a tetramer composed of a [http://en.wikipedia.org/wiki/Protein_dimer dimer] of a dimer, but is able to perform its function solely as a dimer (Fig. 2). [[Image:Tetramer_dimer_of_dimer.png|400px|left|thumb|Figure 2: Tetrameric dimer of dimer for ACAT]]There are <scene name='87/877507/9_tm_helices_per_monomer/1'>nine transmembrane helices</scene> in each domain which create a tunnel for the active site. There are also three helices found on the intracellular side (IH1, IH2, and IH3) and one helix on the extracellular side (EH1). The active site contains three tunnels – the transmembrane tunnel for cholesterol entrance, the cytosolic tunnel for acyl-CoA entrance, and the lumen tunnel for cholesterol ester exit. ACAT also has an amino-terminal cytosolic domain (NTD) that is important for tetramerization of this protein.<ref name= "Cases" /> | ACAT is a tetramer composed of a [http://en.wikipedia.org/wiki/Protein_dimer dimer] of a dimer, but is able to perform its function solely as a dimer (Fig. 2). [[Image:Tetramer_dimer_of_dimer.png|400px|left|thumb|Figure 2: Tetrameric dimer of dimer for ACAT]]There are <scene name='87/877507/9_tm_helices_per_monomer/1'>nine transmembrane helices</scene> in each domain which create a tunnel for the active site. There are also three helices found on the intracellular side (IH1, IH2, and IH3) and one helix on the extracellular side (EH1). The active site contains three tunnels – the transmembrane tunnel for cholesterol entrance, the cytosolic tunnel for acyl-CoA entrance, and the lumen tunnel for cholesterol ester exit. ACAT also has an amino-terminal cytosolic domain (NTD) that is important for tetramerization of this protein.<ref name= "Cases" /> | ||
| - | === Active Site/Important Residues === | ||
| - | An important residue in the ACAT active site is His460, a Histidine, which is located where the tunnels converge. It is thought that His460 is located on TM7<ref name = "Qian" />. When converting to a cholesteryl ester, the <scene name='87/877507/H460_final_1/1'>His460</scene> acts as a catalytic base that deprotonates the cholesterol. An asparagine <scene name='87/877507/Asn241/2'>Asn421</scene> is another important residue in the reaction that is able to form a hydrogen bond with acyl-CoA for stabilization. Additionally, a <scene name='87/877507/Acyl-coa_surface/2'>naturally-occurring substrate</scene> can be found in the active site of ACAT and replaced by cholesterol for synthesis of cholesteryl ester. | ||
=== Dimer-Dimer Interactions === | === Dimer-Dimer Interactions === | ||
Between the two protomers in each dimer, Van der Waals interactions occur between TM1 of one [http://en.wikipedia.org/wiki/Protomer protomer] and the lumenal TM6 and the cytosolic TM9 of the other protomer. The two dimers make limited contact within the membrane through an interface that has <scene name='87/877508/Dimer_interface/1'>hydrophobic residues</scene> in between the two protomers <ref name="Qian" />. | Between the two protomers in each dimer, Van der Waals interactions occur between TM1 of one [http://en.wikipedia.org/wiki/Protomer protomer] and the lumenal TM6 and the cytosolic TM9 of the other protomer. The two dimers make limited contact within the membrane through an interface that has <scene name='87/877508/Dimer_interface/1'>hydrophobic residues</scene> in between the two protomers <ref name="Qian" />. | ||
| + | |||
| + | ===Tunnels=== | ||
| + | The nine transmembrane segments create a cytosolic tunnel and a transmembrane tunnel that meet at the site of catalysis (active site). Acyl-coenzyme A enters the active site though the cytosolic tunnel, and cholesterol enters through the transmembrane tunnel. These then meet in the catalytic site to react and form the cholesteryl ester.[[Image:Cytosol lumen pic.jpg|400px|right|thumb|Figure 4: Orientation showing the cytosolic and lumen sides of the dimer]] When exiting the catalytic site, the cholesterol ester is able to release through the <scene name='87/877507/T_tunnel_final/1'>transmembrane tunnel</scene> to the membrane or through the lumen tunnel to the lumen, and the free CoA is able to release through the <scene name='87/877506/C_tunnel_new/4'>cytosolic tunnel</scene> to the cytosol. Certain residues that line the transmembrane tunnel are important in ACAT activity (E259, E263, R262, P304, L306, V423, V424, M265, I261, and H460)<ref name="Qian" />. | ||
| + | |||
| + | === Active Site/Important Residues === | ||
| + | An important residue in the ACAT active site is His460, a Histidine, which is located where the tunnels converge. It is thought that His460 is located on TM7<ref name = "Qian" />. When converting to a cholesteryl ester, the <scene name='87/877507/H460_final_1/1'>His460</scene> acts as a catalytic base that deprotonates the cholesterol. An asparagine <scene name='87/877507/Asn241/2'>Asn421</scene> is another important residue in the reaction that is able to form a hydrogen bond with acyl-CoA for stabilization. Additionally, a <scene name='87/877507/Acyl-coa_surface/2'>naturally-occurring substrate</scene> can be found in the active site of ACAT and replaced by cholesterol for synthesis of cholesteryl ester. | ||
| + | |||
== Proposed Mechanism == | == Proposed Mechanism == | ||
Due to limited high-resolution structural representations of ACAT, its mechanism remains ambiguous. [[Image:Thenewacatmech2.jpg|250px|left|thumb|Figure 3: Mechanism for ACAT proposed by Qian et al.]] However, the general mechanism involving the substrates and products of ACAT is understood<ref name="Guan">PMID:32424158</ref>. In this reaction, [http://en.wikipedia.org/wiki/Stearoyl-CoA_9-desaturase oleoyl-CoA] and cholesterol are the reactants and they undergo the reaction catalyzed by ACAT to form cholesteryl-oleate which is used as a storage form of cholesterol. The hydroxyl group on cholesterol is deprotonated, then attacks the [http://en.wikipedia.org/wiki/Thioester thioester] bond of oleoyl-CoA, kicking off CoA-SH as a leaving group. | Due to limited high-resolution structural representations of ACAT, its mechanism remains ambiguous. [[Image:Thenewacatmech2.jpg|250px|left|thumb|Figure 3: Mechanism for ACAT proposed by Qian et al.]] However, the general mechanism involving the substrates and products of ACAT is understood<ref name="Guan">PMID:32424158</ref>. In this reaction, [http://en.wikipedia.org/wiki/Stearoyl-CoA_9-desaturase oleoyl-CoA] and cholesterol are the reactants and they undergo the reaction catalyzed by ACAT to form cholesteryl-oleate which is used as a storage form of cholesterol. The hydroxyl group on cholesterol is deprotonated, then attacks the [http://en.wikipedia.org/wiki/Thioester thioester] bond of oleoyl-CoA, kicking off CoA-SH as a leaving group. | ||
However, Qian et al.<ref name="Qian" /> proposed a mechanism involving the important residues His460 and Asn421. In this mechanism, His460 acts as a general base to deprotonate the hydroxyl group on cholesterol, activating it as a [http://en.wikipedia.org/wiki/Nucleophile nucleophile]. Then, Asn421 possibly forms a hydrogen bond with oleoyl-CoA to stabilize the reaction (Fig. 3). | However, Qian et al.<ref name="Qian" /> proposed a mechanism involving the important residues His460 and Asn421. In this mechanism, His460 acts as a general base to deprotonate the hydroxyl group on cholesterol, activating it as a [http://en.wikipedia.org/wiki/Nucleophile nucleophile]. Then, Asn421 possibly forms a hydrogen bond with oleoyl-CoA to stabilize the reaction (Fig. 3). | ||
| - | ===Tunnels=== | ||
| - | The nine transmembrane segments create a cytosolic tunnel and a transmembrane tunnel that meet at the site of catalysis (active site). Acyl-coenzyme A enters the active site though the cytosolic tunnel, and cholesterol enters through the transmembrane tunnel. These then meet in the catalytic site to react and form the cholesteryl ester.[[Image:Cytosol lumen pic.jpg|400px|right|thumb|Figure 4: Orientation showing the cytosolic and lumen sides of the dimer]] When exiting the catalytic site, the cholesterol ester is able to release through the <scene name='87/877507/T_tunnel_final/1'>transmembrane tunnel</scene> to the membrane or through the lumen tunnel to the lumen, and the free CoA is able to release through the <scene name='87/877506/C_tunnel_new/4'>cytosolic tunnel</scene> to the cytosol. Certain residues that line the transmembrane tunnel are important in ACAT activity (E259, E263, R262, P304, L306, V423, V424, M265, I261, and H460)<ref name="Qian" />. | ||
===Allosteric Binding Pocket=== | ===Allosteric Binding Pocket=== | ||
Revision as of 19:15, 19 April 2021
Human Acyl-Coenzyme A
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References
- ↑ Wang L, Qian H, Nian Y, Han Y, Ren Z, Zhang H, Hu L, Prasad BVV, Laganowsky A, Yan N, Zhou M. Structure and mechanism of human diacylglycerol O-acyltransferase 1. Nature. 2020 May;581(7808):329-332. doi: 10.1038/s41586-020-2280-2. Epub 2020 May, 13. PMID:32433610 doi:http://dx.doi.org/10.1038/s41586-020-2280-2
- ↑ Moorthy PS, Neelagandan K, Balasubramanian M, Ponnuswamy MN. Purification, Crystallization and Preliminary X-Ray Diffraction Studies on Goat (Capra hircus) Hemoglobin - A Low Oxygen Affinity Species. Protein Pept Lett. 2009;16(4):454-6. PMID:19356147
- ↑ 3.0 3.1 3.2 3.3 3.4 Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
- ↑ 4.0 4.1 Cases S, Novak S, Zheng YW, Myers HM, Lear SR, Sande E, Welch CB, Lusis AJ, Spencer TA, Krause BR, Erickson SK, Farese RV Jr. ACAT-2, a second mammalian acyl-CoA:cholesterol acyltransferase. Its cloning, expression, and characterization. J Biol Chem. 1998 Oct 9;273(41):26755-64. doi: 10.1074/jbc.273.41.26755. PMID:9756919 doi:http://dx.doi.org/10.1074/jbc.273.41.26755
- ↑ 5.0 5.1 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
- ↑ Rogers MA, Liu J, Song BL, Li BL, Chang CC, Chang TY. Acyl-CoA:cholesterol acyltransferases (ACATs/SOATs): Enzymes with multiple sterols as substrates and as activators. J Steroid Biochem Mol Biol. 2015 Jul;151:102-7. doi: 10.1016/j.jsbmb.2014.09.008., Epub 2014 Sep 12. PMID:25218443 doi:http://dx.doi.org/10.1016/j.jsbmb.2014.09.008
- ↑ Hartmann T, Kuchenbecker J, Grimm MO. Alzheimer's disease: the lipid connection. J Neurochem. 2007 Nov;103 Suppl 1:159-70. doi: 10.1111/j.1471-4159.2007.04715.x. PMID:17986151 doi:http://dx.doi.org/10.1111/j.1471-4159.2007.04715.x
- ↑ Li J, Gu D, Lee SS, Song B, Bandyopadhyay S, Chen S, Konieczny SF, Ratliff TL, Liu X, Xie J, Cheng JX. Abrogating cholesterol esterification suppresses growth and metastasis of pancreatic cancer. Oncogene. 2016 Dec 15;35(50):6378-6388. doi: 10.1038/onc.2016.168. Epub 2016 May , 2. PMID:27132508 doi:http://dx.doi.org/10.1038/onc.2016.168
- ↑ Rudel LL, Shelness GS. Cholesterol esters and atherosclerosis-a game of ACAT and mouse. Nat Med. 2000 Dec;6(12):1313-4. doi: 10.1038/82110. PMID:11100106 doi:http://dx.doi.org/10.1038/82110
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