6k6n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='6k6n' size='340' side='right'caption='[[6k6n]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='6k6n' size='340' side='right'caption='[[6k6n]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6k6n]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6K6N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6k6n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Civ Civ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6K6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6K6N FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6k6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k6n OCA], [http://pdbe.org/6k6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6k6n RCSB], [http://www.ebi.ac.uk/pdbsum/6k6n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6k6n ProSAT]</span></td></tr>
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nef ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11723 CIV])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6k6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6k6n OCA], [https://pdbe.org/6k6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6k6n RCSB], [https://www.ebi.ac.uk/pdbsum/6k6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6k6n ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The human immunodeficiency virus (HIV) accessory protein Nef plays a major role in establishing and maintaining infection, particularly through immune evasion. Many HIV-2-infected people experience long-term viral control and survival, resembling HIV-1 elite control. HIV-2 Nef has overlapping but also distinct functions from HIV-1 Nef. Here we report the crystal structure of HIV-2 Nef core. The di-leucine sorting motif forms a helix bound to neighboring molecules, and moreover, isothermal titration calorimetry demonstrated that the CD3 endocytosis motif can directly bind to HIV-2 Nef, ensuring AP-2-mediated endocytosis for CD3. The highly conserved C-terminal region forms a alpha-helix, absent from HIV-1. We further determined the structure of simian immunodeficiency virus (SIV) Nef harboring this region, demonstrating similar C-terminal alpha-helix, which may contribute to AP-1 binding for MHC-I downregulation. These results provide insights into the distinct pathogenesis of HIV-2 infection.
 +
 +
Structure of HIV-2 Nef Reveals Features Distinct from HIV-1 Involved in Immune Regulation.,Hirao K, Andrews S, Kuroki K, Kusaka H, Tadokoro T, Kita S, Ose T, Rowland-Jones SL, Maenaka K iScience. 2020 Jan 24;23(1):100758. doi: 10.1016/j.isci.2019.100758. Epub 2019, Dec 9. PMID:31927483<ref>PMID:31927483</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6k6n" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Protein Nef|Protein Nef]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Civ]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Andrews, S]]
[[Category: Andrews, S]]

Revision as of 08:27, 21 April 2021

Crystal structure of SIVmac239 Nef protein

PDB ID 6k6n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools