7ask

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP==
==43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP==
-
<StructureSection load='7ask' size='340' side='right'caption='[[7ask]]' scene=''>
+
<StructureSection load='7ask' size='340' side='right'caption='[[7ask]], [[Resolution|resolution]] 4.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ASK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ASK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7ask]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ASK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ASK FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ask FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ask OCA], [https://pdbe.org/7ask PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ask RCSB], [https://www.ebi.ac.uk/pdbsum/7ask PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ask ProSAT]</span></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7ase|7ase]]</div></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ask FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ask OCA], [https://pdbe.org/7ask PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ask RCSB], [https://www.ebi.ac.uk/pdbsum/7ask PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ask ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Canonical mRNA translation in eukaryotes begins with the formation of the 43S pre-initiation complex (PIC). Its assembly requires binding of initiator Met-tRNAi(Met) and several eukaryotic initiation factors (eIFs) to the small ribosomal subunit (40S). Compared to their mammalian hosts, trypanosomatids present significant structural differences in their 40S, suggesting substantial variability in translation initiation. Here, we determine the structure of the 43S PIC from Trypanosoma cruzi, the parasite causing Chagas disease. Our structure shows numerous specific features, such as the variant eIF3 structure and its unique interactions with the large rRNA expansion segments (ESs) 9(S), 7(S), and 6(S), and the association of a kinetoplastid-specific DDX60-like helicase. It also reveals the 40S-binding site of the eIF5 C-terminal domain and structures of key terminal tails of several conserved eIFs underlying their activities within the PIC. Our results are corroborated by glutathione S-transferase (GST) pull-down assays in both human and T. cruzi and mass spectrometry data.
 +
 +
Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts.,Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y Cell Rep. 2020 Dec 22;33(12):108534. doi: 10.1016/j.celrep.2020.108534. PMID:33357443<ref>PMID:33357443</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 7ask" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bochler A]]
+
[[Category: Trypanosoma cruzi]]
-
[[Category: Brito Querido J]]
+
[[Category: Bochler, A]]
-
[[Category: Del Cistia ML]]
+
[[Category: Cistia, M L.Del]]
-
[[Category: Hashem Y]]
+
[[Category: Hashem, Y]]
-
[[Category: Kuhn L]]
+
[[Category: Kuhn, L]]
-
[[Category: Prilepskaja T]]
+
[[Category: Prilepskaja, T]]
-
[[Category: Rimoldi Ribeiro A]]
+
[[Category: Querido, J Brito]]
-
[[Category: Soufari H]]
+
[[Category: Ribeiro, A Rimoldi]]
-
[[Category: Valasek LS]]
+
[[Category: Soufari, H]]
 +
[[Category: Valasek, L S]]
 +
[[Category: Factor]]
 +
[[Category: Helicase]]
 +
[[Category: Kinetoplastid]]
 +
[[Category: Preinitiation]]
 +
[[Category: Translation]]

Revision as of 08:30, 21 April 2021

43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP

PDB ID 7ask

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools