7e0d
From Proteopedia
(Difference between revisions)
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==Structure of L-glutamate oxidase R305E mutant in complex with L-arginine== | ==Structure of L-glutamate oxidase R305E mutant in complex with L-arginine== | ||
| - | <StructureSection load='7e0d' size='340' side='right'caption='[[7e0d]]' scene=''> | + | <StructureSection load='7e0d' size='340' side='right'caption='[[7e0d]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E0D FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7e0d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp._x-119-6 Streptomyces sp. x-119-6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E0D FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e0d OCA], [https://pdbe.org/7e0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e0d RCSB], [https://www.ebi.ac.uk/pdbsum/7e0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e0d ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2e1m|2e1m]], [[7e0c|7e0c]]</div></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Lgox ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=196112 Streptomyces sp. X-119-6])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/L-glutamate_oxidase L-glutamate oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.11 1.4.3.11] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e0d OCA], [https://pdbe.org/7e0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e0d RCSB], [https://www.ebi.ac.uk/pdbsum/7e0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e0d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The alternation of substrate specificity expands the application range of enzymes in industrial, medical, and pharmaceutical fields. l-Glutamate oxidase (LGOX) from Streptomyces sp. X-119-6 catalyzes the oxidative deamination of l-glutamate to produce 2-ketoglutarate with ammonia and hydrogen peroxide. LGOX shows strict substrate specificity for l-glutamate. Previous studies on LGOX revealed that Arg305 in its active site recognizes the side chain of l-glutamate, and replacement of Arg305 by other amino acids drastically changes the substrate specificity of LGOX. Here we demonstrate that the R305E mutant variant of LGOX exhibits strict specificity for l-arginine. The oxidative deamination activity of LGOX to l-arginine is higher than that of l-arginine oxidase form from Pseudomonas sp. TPU 7192. X-ray crystal structure analysis revealed that the guanidino group of l-arginine is recognized not only by Glu305 but also Asp433, Trp564, and Glu617, which interact with Arg305 in wild-type LGOX. Multiple interactions by these residues provide strict specificity and high activity of LGOX R305E toward l-arginine. LGOX R305E is a thermostable and pH stable enzyme. The amount of hydrogen peroxide, which is a byproduct of oxidative deamination of l-arginine by LGOX R305E, is proportional to the concentration of l-arginine in a range from 0 to 100 muM. The linear relationship is maintained around 1 muM of l-arginine. Thus, LGOX R305E is suitable for the determination of l-arginine. | ||
| + | |||
| + | A new l-arginine oxidase engineered from l-glutamate oxidase.,Yano Y, Matsuo S, Ito N, Tamura T, Kusakabe H, Inagaki K, Imada K Protein Sci. 2021 Mar 25. doi: 10.1002/pro.4070. PMID:33764624<ref>PMID:33764624</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7e0d" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: L-glutamate oxidase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Imada K]] | + | [[Category: Streptomyces sp. x-119-6]] |
| - | [[Category: Inagaki K]] | + | [[Category: Imada, K]] |
| - | [[Category: Ito N]] | + | [[Category: Inagaki, K]] |
| - | [[Category: Matsuo S]] | + | [[Category: Ito, N]] |
| + | [[Category: Matsuo, S]] | ||
| + | [[Category: L-amino acid oxidase]] | ||
| + | [[Category: L-glutamic acid oxidase]] | ||
| + | [[Category: Oxidoreductase]] | ||
Revision as of 08:33, 21 April 2021
Structure of L-glutamate oxidase R305E mutant in complex with L-arginine
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