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== Structure ==
== Structure ==
=== Tertiary Structure ===
=== Tertiary Structure ===
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[[Image:Tetramerlabels.jpeg|400 px|right|thumb|'''Figure 2. Tetramer unit of SOAT shown in position within the membrane.''' The dimer units are identical, as indicated by the corresponding green and blue regions. [http://www.rcsb.org/structure/6P2P PBD 6P2P]]] The biological assembly of SOAT is a <scene name='87/877559/Tetramer/11'>tetramer</scene> or a <scene name='87/877559/Tetramer/10'>dimer of dimers</scene>. Functionally, the <scene name='87/877559/Dimer/3'>dimer</scene> units of SOAT are identical and are stabilized by hydrophobic [https://en.wikipedia.org/wiki/Van_der_Waals_force van der Waals interactions] between residues at the <scene name='87/877559/Dimer_interface/3'>dimer interface</scene>. Mutating these residues inhibits enzyme activity, suggesting that the dimer unit of SOAT is critical for enzyme function.<ref name="Guan" /> Each dimer consists of two identical <scene name='87/877559/Monomer/5'>monomer</scene> units, individually made up of nine <scene name='87/877559/Helices_1-9/4'>transmembrane helices</scene> labeled TM1 through TM9. [[Image:Helicesdiagram1.jpeg|400 px|right|thumb|'''Figure 3.''' Labeled helices of SOAT within the membrane]] The van der Waals interactions at the dimer interface stabilize the dimer between the TM1 helice of one monomer unit and the TM6 [https://en.wikipedia.org/wiki/Lumen_(anatomy) lumenal] segment and TM9 [https://en.wikipedia.org/wiki/Cytosol cytosolic] segment of the other monomer unit. Essential helices (TM1, TM5, TM6, and TM9) from the two monomers form the entrance tunnels and catalytic active site.<ref name="Qian">PMID:32433614</ref>
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[[Image:Tetramerlabels.jpeg|400 px|right|thumb|'''Figure 2. Tetramer unit of SOAT shown in position within the membrane.''' The dimer units are identical, as indicated by the corresponding green and blue regions. [http://www.rcsb.org/structure/6P2P PBD 6P2P]]] The biological assembly of SOAT is a <scene name='87/877559/Tetramer/11'>tetramer</scene> or a <scene name='87/877559/Tetramer/10'>dimer of dimers</scene>. Functionally, the <scene name='87/877559/Dimer/3'>dimer</scene> units of SOAT are identical and are stabilized by hydrophobic [https://en.wikipedia.org/wiki/Van_der_Waals_force van der Waals interactions] between residues at the <scene name='87/877559/Dimer_interface/3'>dimer interface</scene>. Mutating these residues inhibits enzyme activity, suggesting that the dimer unit of SOAT is critical for enzyme function.<ref name="Guan" /> Each dimer consists of two identical <scene name='87/877559/Monomer/5'>monomer</scene> units, individually made up of nine <scene name='87/877559/Helices_1-9/4'>transmembrane helices</scene> labeled TM1 through TM9. [[Image:Helicesdiagram1.jpeg|400 px|right|thumb|'''Figure 3.''' Labeled helices of SOAT within the membrane]] The van der Waals interactions at the dimer interface stabilize the dimer between the TM1 helix of one monomer unit and the TM6 [https://en.wikipedia.org/wiki/Lumen_(anatomy) lumenal] segment and TM9 [https://en.wikipedia.org/wiki/Cytosol cytosolic] segment of the other monomer unit. Essential helices (TM1, TM5, TM6, and TM9) from the two monomers form the entrance tunnels and catalytic active site.<ref name="Qian">PMID:32433614</ref>
=== Tunnel System ===
=== Tunnel System ===
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An important structural element of SOAT is the tunnel system through which substrates enter and exit. [[Image:Tunnels2.jpg|350 px|right|thumb|'''Figure 4. 2D layout of the SOAT tunnel system.''' The orientation of the tunnels shows the C tunnel opening to the cytosol and the L tunnel opening to the lumen. The T tunnel opens into the membrane, but is not quite the 90 degree shown in the 2D image.]] There are 3 main tunnels in each monomer: the cytosolic (C) tunnel opening to the cytosol, the transmembrane(T) tunnel opening to the membrane, and the lumenal (L) tunnel opens to the lumen. <ref name="Qian" /> The C tunnel opens to the cytosol of the cell and is the entrance site for the Acyl CoA substrate into the active site. Residues <scene name='87/877559/C_tunnel_and_measurements/6'>N415, Y433, and K445</scene> are involved in hydrogen bonding interactions with polar atoms on CoenzymeA to help stabilize the substrate within the binding pocket. It is important to note that the N415 residue in the PDB file provided is likely incorrect in orientation. We believe it should be flipped so that the hydrogens associated with the nitrogen atom are performing the stabilization shown. Surface representations of SOAT indicate that there are 2 alpha helices that block the entrance to the C tunnel, therefore a conformational change needs to occur to move the 2 helices so the substrate can enter the tunnel. The T tunnel opens into the membrane and is where cholesterol enters to have access to the active site. The two substrates are catalyzed by the H460 in the active site to form the cholesteryl ester. The products then leave via different pathways. The CoA-SH in the C tunnel leaves via that tunnel and is released back into the cytosol. The cholesteryl ester then leaves via either the T tunnel into the membrane or through the L tunnel into the lumen of the cell. <ref name="Qian" />
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An important structural element of SOAT is the tunnel system through which substrates enter and exit. [[Image:Tunnels2.jpg|350 px|right|thumb|'''Figure 4. 2D layout of the SOAT tunnel system.''' The C tunnel opens into the cytosol and the L tunnel opens to the lumen. The T tunnel opens into the membrane, but is not quite oriented at 90 degree as depicted here.]] There are three main tunnels in each monomer: the cytosolic (C) tunnel opens to the cytosol, the transmembrane(T) tunnel opens to the membrane, and the lumenal (L) tunnel opens to the lumen. <ref name="Qian" /> The <scene name='87/877561/Ctunnel_final/1'>C tunnel</scene> is the entrance site for the acyl-CoA substrates, allowing them acess to the active site. Residues <scene name='87/877559/C_tunnel_and_measurements/6'>N415, Y433, and K445</scene> exhibit hydrogen bonding interactions with polar atoms of coenzyme A to help stabilize the substrate within the binding pocket. Surface representations of SOAT indicate that there are two alpha helices that block the entrance to the C tunnel, therefore a conformational change needs to occur before the substrate can enter the tunnel. The <scene name='87/877561/Ttunnel_final/1'>T tunnel</scene> opens into the membrane and provides acess for cholesterol to enter the active site. At the active site, SOAT catalizes the esterification reaction and the products exit through the tunnels. The CoA-SH product exits through the C tunnel and is released back into the cytosol. The cholesteryl ester product exits through either the T tunnel into the membrane or through the <scene name='87/877561/Ltunnel_final/1'>L tunnel</scene> into the lumen of the cell. <ref name="Qian" />
=== Active Site ===
=== Active Site ===
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Within the binding pocket, there are several <scene name='87/877559/Important_residues_2/1'>highly conserved residues</scene>. Their high preservation suggests that the local environment of the binding pocket plays a major role in SOAT activity, but their specific interactions are currently not well studied. However, <scene name='87/877559/Important_residues/1'>W420, N421, H460</scene> have been identified as key catalytic residues.<ref name="Guan" /> Histidine, commonly used as the catalytic base to initiate acyl transferase reactions, is assumed to be the most important catalytic residue in SOAT.<ref name="Das">PMID:18480028</ref> This was confirmed as mutating H460 to alanine completely abolished enzymatic activity.<ref name="Guo">PMID:16154994</ref> Additionally, H460 is highly conserved across a variety of species, further emphasizing its importance in SOAT catalysis.<ref name="Guan" /> It was hypothesized that N421 is responsible for stabilizing the transition state via an oxyanion hole with coenzymeA.<ref name="Qian" /> Additionally, mutations of W420 to alanine rendered SOAT nonfunctional, indicating that it must be essential for catalytic activity. However, its role in the mechanism was not explicitly hypothesized. We believe that it plays a role in substrate binding through <scene name='87/879459/W420_intx/2'>hydrophobic interactions</scene> with coenzyme A.
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Within the binding pocket, there are several <scene name='87/877559/Important_residues_2/1'>highly conserved residues</scene>. Their high preservation suggests that the local environment of the binding pocket plays a major role in SOAT activity, but their specific interactions are currently not well studied. However, <scene name='87/877559/Important_residues/1'>W420, N421, H460</scene> have been identified as key catalytic residues.<ref name="Guan" /> Histidine, commonly used as the catalytic base to initiate acyl transferase reactions, is assumed to be the most important catalytic residue in SOAT.<ref name="Das">PMID:18480028</ref> This was confirmed as mutating H460 to alanine completely abolished enzymatic activity.<ref name="Guo">PMID:16154994</ref> Additionally, H460 is highly conserved across a variety of species, further emphasizing its importance in SOAT catalysis.<ref name="Guan" /> It was hypothesized that N421 is responsible for stabilizing the transition state via an oxyanion hole with coenzymeA.<ref name="Qian" /> Additionally, mutations of W420 to alanine render SOAT nonfunctional, indicating that it must be essential for catalytic activity. However, its role in the mechanism is not explicitly hypothesized. We believe that it plays a role in substrate binding through <scene name='87/879459/W420_intx/2'>hydrophobic interactions</scene> with coenzyme A.
=== Catalytic Mechanism ===
=== Catalytic Mechanism ===
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The substrate of interest, <scene name='87/877555/Oleoyl-coa_in_bp/1'>Oleoyl-CoA</scene>, is shown bound to SOAT to visualize the binding pocket. It must be noted that cholesterol, the other substrate involved, was never correctly imaged in the active site of SOAT. Upon binding of oleoyl-CoA and cholesterol to the SOAT active site, the distal-most nitrogen on H460 acts as a base catalyst to deprotonate the hydroxyl group of cholesterol. This leaves the cholesterol oxygen with a negative charge, making it a good [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The nucleophilic oxygen then attacks oleoyl-CoA at its carbonyl carbon, kicking electron density up to the carbonyl oxygen. The transition state is stabilized by <scene name='87/879459/As_acylcoa_interaction/2'>hydrogen bonding from N421</scene> and the newly protonated H460. [[Image:6p2pMechanism.png|600 px|right|thumb|'''Figure 5.''' Mechanism for the esterification reaction of SOAT with arrow pushing.]]
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The substrate of interest, <scene name='87/877555/Oleoyl-coa_in_bp/1'>oleoyl-CoA</scene>, is shown bound to SOAT to visualize the binding pocket. It must be noted that cholesterol, the other substrate involved, was never correctly imaged in the active site of SOAT. Upon binding of oleoyl-CoA and cholesterol to the SOAT active site, the distal-most nitrogen on H460 acts as a base catalyst to deprotonate the hydroxyl group of cholesterol. This leaves the cholesterol oxygen with a negative charge, making it a good [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The nucleophilic oxygen then attacks oleoyl-CoA at its carbonyl carbon, kicking electron density up to the carbonyl oxygen. The transition state is stabilized by <scene name='87/879459/As_acylcoa_interaction/2'>hydrogen bonding from N421</scene> and the newly protonated H460. [[Image:6p2pMechanism.png|600 px|right|thumb|'''Figure 5.''' Mechanism for the esterification reaction of SOAT with arrow pushing.]]
From the transition state, excess electron density on the carbonyl oxygen is collapsed back into a double bond. This causes the bond between the carbonyl carbon and sulfur to break, shifting electron density to the sulfur atom. To complete the mechanism, the negatively charged sulfur would reclaim the hydrogen from protonated H460. CoenzymeA would exit the active site as a [https://en.wikipedia.org/wiki/Leaving_group leaving group], leaving its oleoyl group attached to cholesterol in the form of a cholesterol ester.
From the transition state, excess electron density on the carbonyl oxygen is collapsed back into a double bond. This causes the bond between the carbonyl carbon and sulfur to break, shifting electron density to the sulfur atom. To complete the mechanism, the negatively charged sulfur would reclaim the hydrogen from protonated H460. CoenzymeA would exit the active site as a [https://en.wikipedia.org/wiki/Leaving_group leaving group], leaving its oleoyl group attached to cholesterol in the form of a cholesterol ester.

Revision as of 13:41, 27 April 2021

Human Sterol O-acyltransferase

Human Sterol O-acyltranferase dimer unit

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References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  2. 2.0 2.1 2.2 2.3 Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  3. Das A, Davis MA, Rudel LL. Identification of putative active site residues of ACAT enzymes. J Lipid Res. 2008 Aug;49(8):1770-81. doi: 10.1194/jlr.M800131-JLR200. Epub 2008, May 13. PMID:18480028 doi:http://dx.doi.org/10.1194/jlr.M800131-JLR200
  4. Guo ZY, Lin S, Heinen JA, Chang CC, Chang TY. The active site His-460 of human acyl-coenzyme A:cholesterol acyltransferase 1 resides in a hitherto undisclosed transmembrane domain. J Biol Chem. 2005 Nov 11;280(45):37814-26. doi: 10.1074/jbc.M508384200. Epub 2005, Sep 8. PMID:16154994 doi:http://dx.doi.org/10.1074/jbc.M508384200
  5. 5.0 5.1 Bhattacharyya R, Kovacs DM. ACAT inhibition and amyloid beta reduction. Biochim Biophys Acta. 2010 Aug;1801(8):960-5. doi: 10.1016/j.bbalip.2010.04.003. , Epub 2010 Apr 14. PMID:20398792 doi:http://dx.doi.org/10.1016/j.bbalip.2010.04.003
  6. 6.0 6.1 Huttunen HJ, Kovacs DM. ACAT as a drug target for Alzheimer's disease. Neurodegener Dis. 2008;5(3-4):212-4. doi: 10.1159/000113705. Epub 2008 Mar 6. PMID:18322393 doi:http://dx.doi.org/10.1159/000113705
  7. Chang C, Dong R, Miyazaki A, Sakashita N, Zhang Y, Liu J, Guo M, Li BL, Chang TY. Human acyl-CoA:cholesterol acyltransferase (ACAT) and its potential as a target for pharmaceutical intervention against atherosclerosis. Acta Biochim Biophys Sin (Shanghai). 2006 Mar;38(3):151-6. doi:, 10.1111/j.1745-7270.2006.00154.x. PMID:16518538 doi:http://dx.doi.org/10.1111/j.1745-7270.2006.00154.x
  8. Ayyagari VN, Wang X, Diaz-Sylvester PL, Groesch K, Brard L. Assessment of acyl-CoA cholesterol acyltransferase (ACAT-1) role in ovarian cancer progression-An in vitro study. PLoS One. 2020 Jan 24;15(1):e0228024. doi: 10.1371/journal.pone.0228024., eCollection 2020. PMID:31978092 doi:http://dx.doi.org/10.1371/journal.pone.0228024

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