User:Megan Leaman/Sandbox 1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 11: Line 11:
=== Tunnel System ===
=== Tunnel System ===
-
[[Image:DGAT tunnels.png|400 px|right|thumb|Figure 3: cytosolic tunnel (green) and hydrophobic tunnel (red)]] There are two main tunnels that allow the enzymatic activity of DGAT to occur. The first is a <scene name='87/877557/Oleoyl_co_a_cytosolic_tunnel/2'>cytosolic tunnel</scene> where the hydrophilic region of the oleyol-CoA binds to the cytosolic face that forms between helices TM6 and TM7. The [https://en.wikipedia.org/wiki/Coenzyme_A CoA] region sits at the cytosolic face with the fatty acid chain extending the rest of the way through the enzyme tunnel. <ref name="Wang">PMID:32433610</ref> Researchers are currently unsure of specifically what residues are involved in the binding of the oleoyl-CoA to the reaction chamber, but they believe that the hydrogen bonding of the <scene name='87/877557/Coa_binding_site/2'>coenzyme A motif</scene> that sits at the cytosolic face of the tunnel. Two residues, His382 and Arg404, are able to form extremely strong hydrogen bonds, ~1.1 Å and an additional residue, Lys391 can form a weak hydrogen bond, ~4 Å. When hydrophobic residues were substituted with the standard residues in the cytosolic tunnel, DGAT was completely inactivated. <ref name="Wang">PMID:32433610</ref> <ref name="Sui">PMID:32433611</ref>
+
[[Image:DGAT tunnels.png|400 px|right|thumb|Figure 3: cytosolic tunnel (green) and hydrophobic tunnel (red)]] There are two main tunnels that allow the enzymatic activity of DGAT1 to occur. The first is a <scene name='87/877557/Oleoyl_co_a_cytosolic_tunnel/2'>cytosolic tunnel</scene> where the hydrophilic region of the oleyol-CoA binds to the cytosolic face that forms between helices TM6 and TM7. The [https://en.wikipedia.org/wiki/Coenzyme_A CoA] region sits at the cytosolic face with the fatty acid chain extending the rest of the way through the enzyme tunnel. <ref name="Wang">PMID:32433610</ref> Researchers are currently unsure of specifically what residues are involved in the binding of the oleoyl-CoA to the reaction chamber, but they believe that the hydrogen bonding of the <scene name='87/877557/Coa_binding_site/2'>coenzyme A motif</scene> that sits at the cytosolic face of the tunnel. Two residues, His382 and Arg404, are able to form extremely strong hydrogen bonds, ~1.1 Å and an additional residue, Lys391 can form a weak hydrogen bond, ~4 Å. When hydrophobic residues were substituted with the standard residues in the cytosolic tunnel, DGAT1 was completely inactivated. <ref name="Wang">PMID:32433610</ref> <ref name="Sui">PMID:32433611</ref>
The second is a <scene name='87/877557/Dag_entrance_tunnel/4'>hydrophobic tunnel</scene> that is orthogonal to the cytosolic tunnel. This tunnel is in the transmembrane region of the enzyme which allows lipids in the membrane to easily access the location. <ref name="Sui">PMID:32433611</ref> Researchers have hypothesized that this tunnel is able to differentiate between DAG, its intended substrate, from other groups that would typically interact with an acyl-CoA, like cholesterol, due to its bent architecture. The bent nature of the tunnel would inhibit more stiff and planar molecules from entering the tunnel and interfering with the activity of the enzyme. <ref name="Sui">PMID:32433611</ref>
The second is a <scene name='87/877557/Dag_entrance_tunnel/4'>hydrophobic tunnel</scene> that is orthogonal to the cytosolic tunnel. This tunnel is in the transmembrane region of the enzyme which allows lipids in the membrane to easily access the location. <ref name="Sui">PMID:32433611</ref> Researchers have hypothesized that this tunnel is able to differentiate between DAG, its intended substrate, from other groups that would typically interact with an acyl-CoA, like cholesterol, due to its bent architecture. The bent nature of the tunnel would inhibit more stiff and planar molecules from entering the tunnel and interfering with the activity of the enzyme. <ref name="Sui">PMID:32433611</ref>

Revision as of 14:15, 27 April 2021

Human Diacylglycerol O-Transferase 1

Human Diacylglycerol O-Transferase 1 6VYI

Drag the structure with the mouse to rotate

References

[1] [10] [11] [12] [9] [13] [2] [4] [3]

  1. 1.0 1.1 Cases S, Smith SJ, Zheng YW, Myers HM, Lear SR, Sande E, Novak S, Collins C, Welch CB, Lusis AJ, Erickson SK, Farese RV Jr. Identification of a gene encoding an acyl CoA:diacylglycerol acyltransferase, a key enzyme in triacylglycerol synthesis. Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13018-23. PMID:9789033
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sui X, Wang K, Gluchowski NL, Elliott SD, Liao M, Walther TC, Farese RV Jr. Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme. Nature. 2020 May;581(7808):323-328. doi: 10.1038/s41586-020-2289-6. Epub 2020 May, 13. PMID:32433611 doi:http://dx.doi.org/10.1038/s41586-020-2289-6
  3. 3.0 3.1 Yen CL, Stone SJ, Koliwad S, Harris C, Farese RV Jr. Thematic review series: glycerolipids. DGAT enzymes and triacylglycerol biosynthesis. J Lipid Res. 2008 Nov;49(11):2283-301. doi: 10.1194/jlr.R800018-JLR200. Epub 2008, Aug 29. PMID:18757836 doi:http://dx.doi.org/10.1194/jlr.R800018-JLR200
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Wang L, Qian H, Nian Y, Han Y, Ren Z, Zhang H, Hu L, Prasad BVV, Laganowsky A, Yan N, Zhou M. Structure and mechanism of human diacylglycerol O-acyltransferase 1. Nature. 2020 May;581(7808):329-332. doi: 10.1038/s41586-020-2280-2. Epub 2020 May, 13. PMID:32433610 doi:http://dx.doi.org/10.1038/s41586-020-2280-2
  5. Caldo, K., Acedo, J. Z., Panigrahi, R., Vederas, J. C., Weselake, R. J., & Lemieux, M. J. (2017). Diacylglycerol Acyltransferase 1 Is Regulated by Its N-Terminal Domain in Response to Allosteric Effectors. Plant physiology, 175(2), 667–680. https://doi.org/10.1104/pp.17.00934
  6. Denison, H., Nilsson, C., Löfgren, L., Himmelmann, A., Mårtensson, G., Knutsson, M., Al-Shurbaji, A., Tornqvist, H., & Eriksson, J. W. (2014). Diacylglycerol acyltransferase 1 inhibition with AZD7687 alters lipid handling and hormone secretion in the gut with intolerable side effects: a randomized clinical trial. Diabetes, obesity & metabolism, 16(4), 334–343. https://doi.org/10.1111/dom.12221
  7. Cao, J., Zhou, Y., Peng, H., Huang, X., Stahler, S., Suri, V., Qadri, A., Gareski, T., Jones, J., Hahm, S., Perreault, M., McKew, J., Shi, M., Xu, X., Tobin, J. F., & Gimeno, R. E. (2011). Targeting Acyl-CoA:diacylglycerol acyltransferase 1 (DGAT1) with small molecule inhibitors for the treatment of metabolic diseases. The Journal of biological chemistry, 286(48), 41838–41851. https://doi.org/10.1074/jbc.M111.245456
  8. Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873
  9. 9.0 9.1 Gluchowski, N. L., Chitraju, C., Picoraro, J. A., Mejhert, N., Pinto, S., Xin, W., Kamin, D. S., Winter, H. S., Chung, W. K., Walther, T. C., & Farese, R. V., Jr (2017). Identification and characterization of a novel DGAT1 missense mutation associated with congenital diarrhea. Journal of lipid research, 58(6), 1230–1237. https://doi.org/10.1194/jlr.P075119
  10. Caldo, K., Acedo, J. Z., Panigrahi, R., Vederas, J. C., Weselake, R. J., & Lemieux, M. J. (2017). Diacylglycerol Acyltransferase 1 Is Regulated by Its N-Terminal Domain in Response to Allosteric Effectors. Plant physiology, 175(2), 667–680. https://doi.org/10.1104/pp.17.00934
  11. Cao, J., Zhou, Y., Peng, H., Huang, X., Stahler, S., Suri, V., Qadri, A., Gareski, T., Jones, J., Hahm, S., Perreault, M., McKew, J., Shi, M., Xu, X., Tobin, J. F., & Gimeno, R. E. (2011). Targeting Acyl-CoA:diacylglycerol acyltransferase 1 (DGAT1) with small molecule inhibitors for the treatment of metabolic diseases. The Journal of biological chemistry, 286(48), 41838–41851. https://doi.org/10.1074/jbc.M111.245456
  12. Denison, H., Nilsson, C., Löfgren, L., Himmelmann, A., Mårtensson, G., Knutsson, M., Al-Shurbaji, A., Tornqvist, H., & Eriksson, J. W. (2014). Diacylglycerol acyltransferase 1 inhibition with AZD7687 alters lipid handling and hormone secretion in the gut with intolerable side effects: a randomized clinical trial. Diabetes, obesity & metabolism, 16(4), 334–343. https://doi.org/10.1111/dom.12221
  13. Haas, J. T., Winter, H. S., Lim, E., Kirby, A., Blumenstiel, B., DeFelice, M., Gabriel, S., Jalas, C., Branski, D., Grueter, C. A., Toporovski, M. S., Walther, T. C., Daly, M. J., & Farese, R. V., Jr (2012). DGAT1 mutation is linked to a congenital diarrheal disorder. The Journal of clinical investigation, 122(12), 4680–4684. https://doi.org/10.1172/JCI64873

Student Contributors

  • Megan Leaman
  • Grace Hall
  • Karina Latsko

Proteopedia Page Contributors and Editors (what is this?)

Megan Leaman

Personal tools