User:Kaitlyn Roberts/Sandbox 2

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=== Tunnel System ===
=== Tunnel System ===
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An important structural element of SOAT is the tunnel system through which substrates enter and exit. [[Image:2D_Tunnels.jpg|350 px|right|thumb|'''Figure 4. 2D layout of the proposed SOAT tunnel system.''' The C tunnel opens into the cytosol and the L tunnel opens to the lumen. The T tunnel opens into the membrane, but is not quite oriented at a 90 degree angle as depicted here.]] There are three main tunnels in each monomer: the cytosolic (C) tunnel opens to the cytosol, the transmembrane (T) tunnel opens to the membrane, and the lumenal (L) tunnel opens to the lumen (Figure 4). <ref name="Qian" /> The <scene name='87/877561/Ctunnel_final/1'>C tunnel</scene> is the entrance site for the acyl-CoA substrates, allowing them acess to the active site. Residues <scene name='87/877559/C_tunnel_and_measurements_fina/1'>N415, Y433, and K445</scene> exhibit hydrogen bonding interactions with polar atoms of coenzyme A to help stabilize the substrate within the binding pocket. Surface representations of SOAT indicate that there are two alpha helices that block the entrance to the C tunnel, therefore a conformational change needs to occur before the substrate can enter the tunnel. The <scene name='87/877561/Ttunnel_final/1'>T tunnel</scene> opens into the membrane and provides access for cholesterol to enter the active site. At the active site, SOAT catalizes the esterification reaction and the products exit through the tunnels. The CoA-SH product exits through the C tunnel and is released back into the cytosol. The cholesteryl ester product exits through either the T tunnel into the membrane or through the <scene name='87/877561/Ltunnelfinal/1'>L tunnel</scene>
+
An important structural element of SOAT is the tunnel system through which substrates enter and exit. [[Image:2D_Tunnels.jpg|350 px|right|thumb|'''Figure 4. 2D layout of the proposed SOAT tunnel system.''' The C tunnel opens into the cytosol and the L tunnel opens to the lumen. The T tunnel opens into the membrane, but is not quite oriented at a 90 degree angle as depicted here.]] There are three main tunnels in each monomer: the cytosolic (C) tunnel opens to the cytosol, the transmembrane (T) tunnel opens to the membrane, and the lumenal (L) tunnel opens to the lumen (Figure 4). <ref name="Qian" /> The <scene name='87/879459/Ctunnel_final/1'>C tunnel</scene> is the entrance site for the acyl-CoA substrates, allowing them acess to the active site. Residues <scene name='87/877559/C_tunnel_and_measurements_fina/1'>N415, Y433, and K445</scene> exhibit hydrogen bonding interactions with polar atoms of coenzyme A to help stabilize the substrate within the binding pocket. Surface representations of SOAT indicate that there are two alpha helices that block the entrance to the C tunnel, therefore a conformational change needs to occur before the substrate can enter the tunnel. The <scene name='87/877561/Ttunnel_final/1'>T tunnel</scene> opens into the membrane and provides access for cholesterol to enter the active site. At the active site, SOAT catalizes the esterification reaction and the products exit through the tunnels. The CoA-SH product exits through the C tunnel and is released back into the cytosol. The cholesteryl ester product exits through either the T tunnel into the membrane or through the <scene name='87/877561/Ltunnelfinal/1'>L tunnel</scene>
into the lumen of the cell. <ref name="Qian" />
into the lumen of the cell. <ref name="Qian" />

Revision as of 16:08, 27 April 2021

Human Sterol O-acyltransferase

Human Sterol O-acyltranferase dimer unit

Drag the structure with the mouse to rotate

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
  2. 2.0 2.1 2.2 2.3 Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
  3. Das A, Davis MA, Rudel LL. Identification of putative active site residues of ACAT enzymes. J Lipid Res. 2008 Aug;49(8):1770-81. doi: 10.1194/jlr.M800131-JLR200. Epub 2008, May 13. PMID:18480028 doi:http://dx.doi.org/10.1194/jlr.M800131-JLR200
  4. Guo ZY, Lin S, Heinen JA, Chang CC, Chang TY. The active site His-460 of human acyl-coenzyme A:cholesterol acyltransferase 1 resides in a hitherto undisclosed transmembrane domain. J Biol Chem. 2005 Nov 11;280(45):37814-26. doi: 10.1074/jbc.M508384200. Epub 2005, Sep 8. PMID:16154994 doi:http://dx.doi.org/10.1074/jbc.M508384200
  5. 5.0 5.1 Bhattacharyya R, Kovacs DM. ACAT inhibition and amyloid beta reduction. Biochim Biophys Acta. 2010 Aug;1801(8):960-5. doi: 10.1016/j.bbalip.2010.04.003. , Epub 2010 Apr 14. PMID:20398792 doi:http://dx.doi.org/10.1016/j.bbalip.2010.04.003
  6. 6.0 6.1 Huttunen HJ, Kovacs DM. ACAT as a drug target for Alzheimer's disease. Neurodegener Dis. 2008;5(3-4):212-4. doi: 10.1159/000113705. Epub 2008 Mar 6. PMID:18322393 doi:http://dx.doi.org/10.1159/000113705
  7. Chang C, Dong R, Miyazaki A, Sakashita N, Zhang Y, Liu J, Guo M, Li BL, Chang TY. Human acyl-CoA:cholesterol acyltransferase (ACAT) and its potential as a target for pharmaceutical intervention against atherosclerosis. Acta Biochim Biophys Sin (Shanghai). 2006 Mar;38(3):151-6. doi:, 10.1111/j.1745-7270.2006.00154.x. PMID:16518538 doi:http://dx.doi.org/10.1111/j.1745-7270.2006.00154.x
  8. Ayyagari VN, Wang X, Diaz-Sylvester PL, Groesch K, Brard L. Assessment of acyl-CoA cholesterol acyltransferase (ACAT-1) role in ovarian cancer progression-An in vitro study. PLoS One. 2020 Jan 24;15(1):e0228024. doi: 10.1371/journal.pone.0228024., eCollection 2020. PMID:31978092 doi:http://dx.doi.org/10.1371/journal.pone.0228024

Student Contributors

  • Kylie Pfeifer
  • Stephanie Pellegrino
  • Kaitlyn Roberts

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Kaitlyn Roberts

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