User:Kaitlyn Roberts/Sandbox 2
From Proteopedia
(Difference between revisions)
Line 19: | Line 19: | ||
=== Catalytic Mechanism === | === Catalytic Mechanism === | ||
- | The substrate of interest, <scene name='87/879459/Oleoyl-coa_in_bp/2'>oleoyl-CoA</scene>, is shown bound to SOAT to visualize the binding pocket. It must be noted that cholesterol, the other substrate involved, was never correctly imaged in the active site of SOAT. Upon binding of oleoyl-CoA and cholesterol to the SOAT active site, the distal-most nitrogen on H460 acts as a base catalyst to deprotonate the hydroxyl group of cholesterol. This leaves the cholesterol oxygen with a negative charge, making it a good [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The nucleophilic oxygen then attacks oleoyl-CoA at its carbonyl carbon, kicking electron density up to the carbonyl oxygen. The transition state is stabilized by <scene name='87/879459/As_acylcoa_interaction/3'>hydrogen bonding from N421</scene> and the newly protonated H460 (Figure 5). [[Image:6p2pMechanism.png|600 px|right|thumb|'''Figure 5. Mechanism for the esterification reaction of SOAT with arrow pushing.''']] | + | The substrate of interest, <scene name='87/879459/Oleoyl-coa_in_bp/2'>oleoyl-CoA</scene>, is shown bound to SOAT to visualize the binding pocket. It must be noted that cholesterol, the other substrate involved, was never correctly imaged in the active site of SOAT. Upon binding of oleoyl-CoA and cholesterol to the SOAT active site, the distal-most nitrogen on <scene name='87/879459/Key_cat_residues/3'>H460</scene> acts as a base catalyst to deprotonate the hydroxyl group of cholesterol. This leaves the cholesterol oxygen with a negative charge, making it a good [https://en.wikipedia.org/wiki/Nucleophile nucleophile]. The nucleophilic oxygen then attacks oleoyl-CoA at its carbonyl carbon, kicking electron density up to the carbonyl oxygen. The transition state is stabilized by <scene name='87/879459/As_acylcoa_interaction/3'>hydrogen bonding from N421</scene> and the newly protonated H460 (Figure 5). [[Image:6p2pMechanism.png|600 px|right|thumb|'''Figure 5. Mechanism for the esterification reaction of SOAT with arrow pushing.''']] |
From the transition state, excess electron density on the carbonyl oxygen is collapsed back into a double bond. This causes the bond between the carbonyl carbon and sulfur to break, shifting electron density to the sulfur atom. To complete the mechanism, the negatively charged sulfur would reclaim the hydrogen from protonated H460. Coenzyme A would exit the active site as a [https://en.wikipedia.org/wiki/Leaving_group leaving group], leaving its oleoyl group attached to cholesterol in the form of a cholesteryl ester (Figure 5). | From the transition state, excess electron density on the carbonyl oxygen is collapsed back into a double bond. This causes the bond between the carbonyl carbon and sulfur to break, shifting electron density to the sulfur atom. To complete the mechanism, the negatively charged sulfur would reclaim the hydrogen from protonated H460. Coenzyme A would exit the active site as a [https://en.wikipedia.org/wiki/Leaving_group leaving group], leaving its oleoyl group attached to cholesterol in the form of a cholesteryl ester (Figure 5). |
Revision as of 16:20, 27 April 2021
Human Sterol O-acyltransferase
|
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Guan C, Niu Y, Chen SC, Kang Y, Wu JX, Nishi K, Chang CCY, Chang TY, Luo T, Chen L. Structural insights into the inhibition mechanism of human sterol O-acyltransferase 1 by a competitive inhibitor. Nat Commun. 2020 May 18;11(1):2478. doi: 10.1038/s41467-020-16288-4. PMID:32424158 doi:http://dx.doi.org/10.1038/s41467-020-16288-4
- ↑ 2.0 2.1 2.2 2.3 Qian H, Zhao X, Yan R, Yao X, Gao S, Sun X, Du X, Yang H, Wong CCL, Yan N. Structural basis for catalysis and substrate specificity of human ACAT1. Nature. 2020 May;581(7808):333-338. doi: 10.1038/s41586-020-2290-0. Epub 2020 May, 13. PMID:32433614 doi:http://dx.doi.org/10.1038/s41586-020-2290-0
- ↑ Das A, Davis MA, Rudel LL. Identification of putative active site residues of ACAT enzymes. J Lipid Res. 2008 Aug;49(8):1770-81. doi: 10.1194/jlr.M800131-JLR200. Epub 2008, May 13. PMID:18480028 doi:http://dx.doi.org/10.1194/jlr.M800131-JLR200
- ↑ Guo ZY, Lin S, Heinen JA, Chang CC, Chang TY. The active site His-460 of human acyl-coenzyme A:cholesterol acyltransferase 1 resides in a hitherto undisclosed transmembrane domain. J Biol Chem. 2005 Nov 11;280(45):37814-26. doi: 10.1074/jbc.M508384200. Epub 2005, Sep 8. PMID:16154994 doi:http://dx.doi.org/10.1074/jbc.M508384200
- ↑ 5.0 5.1 Bhattacharyya R, Kovacs DM. ACAT inhibition and amyloid beta reduction. Biochim Biophys Acta. 2010 Aug;1801(8):960-5. doi: 10.1016/j.bbalip.2010.04.003. , Epub 2010 Apr 14. PMID:20398792 doi:http://dx.doi.org/10.1016/j.bbalip.2010.04.003
- ↑ 6.0 6.1 Huttunen HJ, Kovacs DM. ACAT as a drug target for Alzheimer's disease. Neurodegener Dis. 2008;5(3-4):212-4. doi: 10.1159/000113705. Epub 2008 Mar 6. PMID:18322393 doi:http://dx.doi.org/10.1159/000113705
- ↑ Chang C, Dong R, Miyazaki A, Sakashita N, Zhang Y, Liu J, Guo M, Li BL, Chang TY. Human acyl-CoA:cholesterol acyltransferase (ACAT) and its potential as a target for pharmaceutical intervention against atherosclerosis. Acta Biochim Biophys Sin (Shanghai). 2006 Mar;38(3):151-6. doi:, 10.1111/j.1745-7270.2006.00154.x. PMID:16518538 doi:http://dx.doi.org/10.1111/j.1745-7270.2006.00154.x
- ↑ Ayyagari VN, Wang X, Diaz-Sylvester PL, Groesch K, Brard L. Assessment of acyl-CoA cholesterol acyltransferase (ACAT-1) role in ovarian cancer progression-An in vitro study. PLoS One. 2020 Jan 24;15(1):e0228024. doi: 10.1371/journal.pone.0228024., eCollection 2020. PMID:31978092 doi:http://dx.doi.org/10.1371/journal.pone.0228024
Student Contributors
- Kylie Pfeifer
- Stephanie Pellegrino
- Kaitlyn Roberts