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| ==Structure of the chitin binding protein 21 (CBP21)== | | ==Structure of the chitin binding protein 21 (CBP21)== |
- | <StructureSection load='2lhs' size='340' side='right' caption='[[2lhs]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2lhs' size='340' side='right'caption='[[2lhs]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2lhs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_marcescens"_(bizio_1823)_trevisan_in_de_toni_and_trevisan_1889 "bacillus marcescens" (bizio 1823) trevisan in de toni and trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LHS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LHS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2lhs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_marcescens"_(bizio_1823)_trevisan_in_de_toni_and_trevisan_1889 "bacillus marcescens" (bizio 1823) trevisan in de toni and trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LHS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LHS FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ben|2ben]]</td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ben|2ben]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=615 "Bacillus marcescens" (Bizio 1823) Trevisan in de Toni and Trevisan 1889])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cbp ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=615 "Bacillus marcescens" (Bizio 1823) Trevisan in de Toni and Trevisan 1889])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lhs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lhs OCA], [http://pdbe.org/2lhs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lhs RCSB], [http://www.ebi.ac.uk/pdbsum/2lhs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2lhs ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lhs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lhs OCA], [https://pdbe.org/2lhs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lhs RCSB], [https://www.ebi.ac.uk/pdbsum/2lhs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lhs ProSAT]</span></td></tr> |
| </table> | | </table> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Large Structures]] |
| [[Category: Aachmann, F L]] | | [[Category: Aachmann, F L]] |
| [[Category: Eijsink, V G]] | | [[Category: Eijsink, V G]] |
| [[Category: Vaaje-Kolstad, G]] | | [[Category: Vaaje-Kolstad, G]] |
| [[Category: Chitin binding protein]] | | [[Category: Chitin binding protein]] |
| Structural highlights
Publication Abstract from PubMed
Lytic polysaccharide monooxygenases currently classified as carbohydrate binding module family 33 (CBM33) and glycoside hydrolase family 61 (GH61) are likely to play important roles in future biorefining. However, the molecular basis of their unprecedented catalytic activity remains largely unknown. We have used NMR techniques and isothermal titration calorimetry to address structural and functional aspects of CBP21, a chitin-active CBM33. NMR structural and relaxation studies showed that CBP21 is a compact and rigid molecule, and the only exception is the catalytic metal binding site. NMR data further showed that His28 and His114 in the catalytic center bind a variety of divalent metal ions with a clear preference for Cu(2+) (K(d) = 55 nM; from isothermal titration calorimetry) and higher preference for Cu(1+) (K(d) approximately 1 nM; from the experimentally determined redox potential for CBP21-Cu(2+) of 275 mV using a thermodynamic cycle). Strong binding of Cu(1+) was also reflected in a reduction in the pK(a) values of the histidines by 3.6 and 2.2 pH units, respectively. Cyanide, a mimic of molecular oxygen, was found to bind to the metal ion only. These data support a model where copper is reduced on the enzyme by an externally provided electron and followed by oxygen binding and activation by internal electron transfer. Interactions of CBP21 with a crystalline substrate were mapped in a (2)H/(1)H exchange experiment, which showed that substrate binding involves an extended planar binding surface, including the metal binding site. Such a planar catalytic surface seems well-suited to interact with crystalline substrates.
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions.,Aachmann FL, Sorlie M, Skjak-Braek G, Eijsink VG, Vaaje-Kolstad G Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18779-84. doi:, 10.1073/pnas.1208822109. Epub 2012 Oct 29. PMID:23112164[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Aachmann FL, Sorlie M, Skjak-Braek G, Eijsink VG, Vaaje-Kolstad G. NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18779-84. doi:, 10.1073/pnas.1208822109. Epub 2012 Oct 29. PMID:23112164 doi:http://dx.doi.org/10.1073/pnas.1208822109
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