1gr3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='1gr3' size='340' side='right'caption='[[1gr3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
<StructureSection load='1gr3' size='340' side='right'caption='[[1gr3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1gr3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GR3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GR3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1gr3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GR3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gr3 OCA], [http://pdbe.org/1gr3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gr3 RCSB], [http://www.ebi.ac.uk/pdbsum/1gr3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gr3 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gr3 OCA], [https://pdbe.org/1gr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gr3 RCSB], [https://www.ebi.ac.uk/pdbsum/1gr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gr3 ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Defects in COL10A1 are the cause of Schmid type metaphyseal chondrodysplasia (SMCD) [MIM:[http://omim.org/entry/156500 156500]]. SMCD is a dominantly inherited disorder of the osseous skeleton. The cardinal features of the phenotype are mild short stature, coxa vara and a waddling gait. Radiography usually shows sclerosis of the ribs, flaring of the metaphyses, and a wide irregular growth plate, especially of the knees. A variant form of SMCD is spondylometaphyseal dysplasia Japanese type. It is characterized by spinal involvement comprising mild platyspondyly, vertebral body abnormalities, and end-plate irregularity.<ref>PMID:8304336</ref> <ref>PMID:8004099</ref> <ref>PMID:7876225</ref> <ref>PMID:7607655</ref> <ref>PMID:8782043</ref> <ref>PMID:9067753</ref> <ref>PMID:9852679</ref> <ref>PMID:15880705</ref>
+
[[https://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Defects in COL10A1 are the cause of Schmid type metaphyseal chondrodysplasia (SMCD) [MIM:[https://omim.org/entry/156500 156500]]. SMCD is a dominantly inherited disorder of the osseous skeleton. The cardinal features of the phenotype are mild short stature, coxa vara and a waddling gait. Radiography usually shows sclerosis of the ribs, flaring of the metaphyses, and a wide irregular growth plate, especially of the knees. A variant form of SMCD is spondylometaphyseal dysplasia Japanese type. It is characterized by spinal involvement comprising mild platyspondyly, vertebral body abnormalities, and end-plate irregularity.<ref>PMID:8304336</ref> <ref>PMID:8004099</ref> <ref>PMID:7876225</ref> <ref>PMID:7607655</ref> <ref>PMID:8782043</ref> <ref>PMID:9067753</ref> <ref>PMID:9852679</ref> <ref>PMID:15880705</ref>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Type X collagen is a product of hypertrophic chondrocytes and has been localized to presumptive mineralization zones of hyaline cartilage.
+
[[https://www.uniprot.org/uniprot/COAA1_HUMAN COAA1_HUMAN]] Type X collagen is a product of hypertrophic chondrocytes and has been localized to presumptive mineralization zones of hyaline cartilage.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]

Revision as of 09:51, 26 May 2021

Structure of the human collagen X NC1 trimer

PDB ID 1gr3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools