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| | ==Cat r 1== | | ==Cat r 1== |
| - | <StructureSection load='2mc9' size='340' side='right' caption='[[2mc9]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2mc9' size='340' side='right'caption='[[2mc9]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2mc9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Catro Catro]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MC9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MC9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2mc9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Catro Catro]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MC9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MC9 FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PCKR1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4058 CATRO])</td></tr> | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PCKR1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4058 CATRO])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mc9 OCA], [http://pdbe.org/2mc9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mc9 RCSB], [http://www.ebi.ac.uk/pdbsum/2mc9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mc9 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mc9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mc9 OCA], [https://pdbe.org/2mc9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mc9 RCSB], [https://www.ebi.ac.uk/pdbsum/2mc9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mc9 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CYPH_CATRO CYPH_CATRO]] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. | + | [[https://www.uniprot.org/uniprot/CYPH_CATRO CYPH_CATRO]] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | ==See Also== | | ==See Also== |
| - | *[[Peptidyl-prolyl cis-trans isomerase|Peptidyl-prolyl cis-trans isomerase]] | + | *[[Cyclophilin 3D structures|Cyclophilin 3D structures]] |
| | + | *[[Peptidyl-prolyl cis-trans isomerase 3D structures|Peptidyl-prolyl cis-trans isomerase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Catro]] | | [[Category: Catro]] |
| | + | [[Category: Large Structures]] |
| | [[Category: Peptidylprolyl isomerase]] | | [[Category: Peptidylprolyl isomerase]] |
| | [[Category: Ghosh, D]] | | [[Category: Ghosh, D]] |
| Structural highlights
Function
[CYPH_CATRO] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Publication Abstract from PubMed
Cyclophilin (Cyp) allergens are considered pan-allergens due to frequently reported cross-reactivity. In addition to well studied fungal Cyps, a number of plant Cyps were identified as allergens (e.g. Bet v 7 from birch pollen, Cat r 1 from periwinkle pollen). However, there are conflicting data regarding their antigenic/allergenic cross-reactivity, with no plant Cyp allergen structures available for comparison. Because amino acid residues are fairly conserved between plant and fungal Cyps, it is particularly interesting to check whether they can cross-react. Cat r 1 was identified by immunoblotting using allergic patients' sera followed by N-terminal sequencing. Cat r 1 ( approximately 91% sequence identity to Bet v 7) was cloned from a cDNA library and expressed in Escherichia coli. Recombinant Cat r 1 was utilized to confirm peptidyl-prolyl cis-trans-isomerase (PPIase) activity by a PPIase assay and the allergenic property by an IgE-specific immunoblotting and rat basophil leukemia cell (RBL-SX38) mediator release assay. Inhibition-ELISA showed cross-reactive binding of serum IgE from Cat r 1-allergic individuals to fungal allergenic Cyps Asp f 11 and Mala s 6. The molecular structure of Cat r 1 was determined by NMR spectroscopy. The antigenic surface was examined in relation to its plant, animal, and fungal homologues. The structure revealed a typical cyclophilin fold consisting of a compact beta-barrel made up of seven anti-parallel beta-strands along with two surrounding alpha-helices. This is the first structure of an allergenic plant Cyp revealing high conservation of the antigenic surface particularly near the PPIase active site, which supports the pronounced cross-reactivity among Cyps from various sources.
Primary identification, biochemical characterization, and immunologic properties of the allergenic pollen cyclophilin cat R 1.,Ghosh D, Mueller GA, Schramm G, Edwards LL, Petersen A, London RE, Haas H, Gupta Bhattacharya S J Biol Chem. 2014 Aug 1;289(31):21374-85. doi: 10.1074/jbc.M114.559971. Epub 2014, Jun 17. PMID:24939849[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ghosh D, Mueller GA, Schramm G, Edwards LL, Petersen A, London RE, Haas H, Gupta Bhattacharya S. Primary identification, biochemical characterization, and immunologic properties of the allergenic pollen cyclophilin cat R 1. J Biol Chem. 2014 Aug 1;289(31):21374-85. doi: 10.1074/jbc.M114.559971. Epub 2014, Jun 17. PMID:24939849 doi:http://dx.doi.org/10.1074/jbc.M114.559971
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