Cytochrome C 3D structures

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(New page: ==3D structures of cytochrome C== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Cytochrome C **3zcf – hCy...)
Line 7: Line 7:
**[[3zcf]] – hCyt - human<br />
**[[3zcf]] – hCyt - human<br />
-
**[[3nwv]], [[3zoo]], [[5ty3]], [[5o10]], [[5exq]] – hCyt (mutant) <BR />
+
**[[3nwv]], [[3zoo]], [[5ty3]], [[5o10]], [[5exq]], [[6ecj]] – hCyt (mutant) <BR />
**[[3zcf]] – hCyt<br />
**[[3zcf]] – hCyt<br />
**[[1j3s]] – hCyt - NMR<BR />
**[[1j3s]] – hCyt - NMR<BR />
-
**[[3nbs]], [[3nbt]], [[1crc]], [[1hrc]], [[3o1y]], [[3o20]], [[3wc8]], [[3wui]], [[4rsz]] – hoCyt – horse<BR />
+
**[[3nbs]], [[3nbt]], [[1crc]], [[1hrc]], [[3o1y]], [[3o20]], [[3wc8]], [[3wui]], [[4rsz]], [[6k9i]], [[6k9j]] – hoCyt – horse<BR />
**[[5zkv]] - hoCyt (mutant) <br />
**[[5zkv]] - hoCyt (mutant) <br />
**[[1lc1]], [[1lc2]], [[1m60]], [[1giw]], [[2giw]], [[1akk]], [[2frc]], [[1ocd]] – hoCyt – NMR<BR />
**[[1lc1]], [[1lc2]], [[1m60]], [[1giw]], [[2giw]], [[1akk]], [[2frc]], [[1ocd]] – hoCyt – NMR<BR />
Line 20: Line 20:
**[[1lfm]], [[1i55]], [[3cyt]], [[1i54]], [[1i5t]] - Cyt – tuna<BR />
**[[1lfm]], [[1i55]], [[3cyt]], [[1i54]], [[1i5t]] - Cyt – tuna<BR />
**[[5cyt]] – Cyt - albacore<br />
**[[5cyt]] – Cyt - albacore<br />
- 
**[[1crg]], [[1crh]], [[1cri]], [[1crj]], [[ 2ycc]] - yCyt - yeast<BR />
**[[1crg]], [[1crh]], [[1cri]], [[1crj]], [[ 2ycc]] - yCyt - yeast<BR />
**[[1ytc]], [[1cie]], [[1cif]], [[1cig]], [[1cih]], [[1csu]], [[1csv]], [[1csw]], [[1csx]], [[1chh]], [[1chi]], [[1chj]], [[1cty]], [[1ctz]] - yCyt (mutant)<br />
**[[1ytc]], [[1cie]], [[1cif]], [[1cig]], [[1cih]], [[1csu]], [[1csv]], [[1csw]], [[1csx]], [[1chh]], [[1chi]], [[1chj]], [[1cty]], [[1ctz]] - yCyt (mutant)<br />
**[[2orl]] - yCyt (mutant) – NMR<BR />
**[[2orl]] - yCyt (mutant) – NMR<BR />
-
**[[1rap]], [[1raq]], [[1ycc]]- yCyt iso-1<BR />
+
**[[1rap]], [[1raq]], [[1ycc]], [[6rsk]], [[6rsl]] - yCyt iso-1<BR />
**[[1irv]], [[1irw]], [[1lms]], [[4mu8]], [[4n0k]], [[6gda]], [[6gd9]], [[6gd8]], [[6gd7]], [[6gd6]], [[5t7h]], [[5kke]], [[4qao]], [[4q5p]] – yCyt iso-1 (mutant) <BR />
**[[1irv]], [[1irw]], [[1lms]], [[4mu8]], [[4n0k]], [[6gda]], [[6gd9]], [[6gd8]], [[6gd7]], [[6gd6]], [[5t7h]], [[5kke]], [[4qao]], [[4q5p]] – yCyt iso-1 (mutant) <BR />
**[[1yic]] – yCyt iso-1 – NMR<BR />
**[[1yic]] – yCyt iso-1 – NMR<BR />
Line 46: Line 45:
**[[3cp5]] – Cyt residues 29-152 – ''Rhodothermus marinus''<BR />
**[[3cp5]] – Cyt residues 29-152 – ''Rhodothermus marinus''<BR />
**[[6cun]], [[6cuk]] - RmCyt (mutant) <br />
**[[6cun]], [[6cuk]] - RmCyt (mutant) <br />
-
**[[6hih]] – Cyt b – ''Methylococcus capsulatus''<br />
+
**[[6hih]] – Cyt β – ''Methylococcus capsulatus''<br />
**[[6c4w]] – Cyt – ''Pichia membranifaciens'' <br />
**[[6c4w]] – Cyt – ''Pichia membranifaciens'' <br />
**[[5lo9]] – Cyt – ''Marichromatium purpuratum'' <br />
**[[5lo9]] – Cyt – ''Marichromatium purpuratum'' <br />
 +
**[[6tk0]] – TpCyt – ''Thioalkalivibrio paradoxus'' <br />
*Cytochrome C complex
*Cytochrome C complex
Line 56: Line 56:
**[[1wej]] – hoCyt + Fab fragment<BR />
**[[1wej]] – hoCyt + Fab fragment<BR />
**[[5wve]] - hoCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[5wve]] - hoCyt + APAF-1 + caspase-9 – Cryo EM <br />
 +
**[[6suv]] - hoCyt + calixarine <br />
**[[5juy]] - bCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[5juy]] - bCyt + APAF-1 + caspase-9 – Cryo EM <br />
**[[3j2t]] – bCyt + apoptotic protease-activating factor 1 – Cryo EM<br />
**[[3j2t]] – bCyt + apoptotic protease-activating factor 1 – Cryo EM<br />
Line 65: Line 66:
**[[1nmi]] – yCyt iso-1 + imidazole<BR />
**[[1nmi]] – yCyt iso-1 + imidazole<BR />
**[[2b0z]], [[2b10]], [[2b11]], [[2b12]], [[1u74]], [[1s6v]], [[2bcn]] – yCyt iso-1 (mutant) + Cyt peroxidase<BR />
**[[2b0z]], [[2b10]], [[2b11]], [[2b12]], [[1u74]], [[1s6v]], [[2bcn]] – yCyt iso-1 (mutant) + Cyt peroxidase<BR />
-
**[[5lft]], [[5kpf]] – yCyt iso-1 + pegylated calix arene derivative<br />
+
**[[5lft]], [[5kpf]], [[6suy]] – yCyt iso-1 + pegylated calix arene derivative<br />
-
**[[6egz]], [[6egy]], [[5ncv]], [[5lyc]], [[4ye1]] – yCyt iso-1 (mutant) + pegylated calix arene derivative<br />
+
**[[6egz]], [[6egy]], [[5ncv]], [[5lyc]], [[4ye1]], [[6y0j]] – yCyt iso-1 (mutant) + pegylated calix arene derivative<br />
**[[5klu]] – yCyt iso-1 (mutant) + maltopyranoside<br />
**[[5klu]] – yCyt iso-1 (mutant) + maltopyranoside<br />
-
**[[2pcc]] – yCyt iso-1 + Cyt peroxidase<BR />
+
**[[2pcc]], [[6p41]], [[6p42]] – yCyt iso-1 + Cyt peroxidase<BR />
 +
**[[6p43]] – yCyt iso-1 (mutant) + CytC peroxidase<br />
**[[2j7a]] – DvCyt catalytic + electron donor subunits<BR />
**[[2j7a]] – DvCyt catalytic + electron donor subunits<BR />
**[[1dw1]], [[1dw2]] - RsCyt diheme residues 1-112 + small molecule<BR />
**[[1dw1]], [[1dw2]] - RsCyt diheme residues 1-112 + small molecule<BR />
**[[1ogy]] - RsCyt diheme residues 25-154 + nitrate reductase catalytic subunit<BR />
**[[1ogy]] - RsCyt diheme residues 25-154 + nitrate reductase catalytic subunit<BR />
**[[1fs7]], [[1fs8]], [[1fs9]] – WsCyt + small molecule – ''Wolinella succinogenes''<BR />
**[[1fs7]], [[1fs8]], [[1fs9]] – WsCyt + small molecule – ''Wolinella succinogenes''<BR />
-
**[[5n1t]] – Cyt + sulfide dehydrogenase + Copc – ''Thioalkalivibrio paradoxus'' <br />
+
**[[5n1t]] – TpCyt + sulfide dehydrogenase + Copc <br />
*Cytochrome C’
*Cytochrome C’
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**[[3vcr]] - CtCyt<br />
**[[3vcr]] - CtCyt<br />
**[[3vrc]] – Cyt – ''Thermochromatium tepidum''<br />
**[[3vrc]] – Cyt – ''Thermochromatium tepidum''<br />
-
**[[4cx9]] - Cyt – ''Shewanella frigidimarina''<br />
+
**[[4cx9]] - SfCyt – ''Shewanella frigidimarina''<br />
-
**[[4ulv]] - Cyt + NO – ''Shewanella frigidimarina''<br />
+
**[[4ulv]] - SfCyt + NO <br />
 +
**[[6a3k]] – Cyt – ''Shewanella benthica''<br />
 +
**[[6a3l]] – SvCyt – ''Shewanella violacea''<br />
**[[5b3i]] – Cyt – ''Hydrogenophilus thermoluteolus'' <br />
**[[5b3i]] – Cyt – ''Hydrogenophilus thermoluteolus'' <br />
 +
**[[6hih]] – Cyt β – ''Methylococcus capsulatus''<br />
*Cytochrome C’’
*Cytochrome C’’
Line 105: Line 110:
*Cytochrome C1
*Cytochrome C1
-
**[[3cx5]], [[3cxh]] – yCyt in complex III<BR />
+
**[[6fo0]] - bCyt in Bc1 complex – Cryo EM<br />
-
**[[2ibz]] - yCyt in complex III + inhibitor<BR />
+
**[[1l0n]], [[1be3]], [[1bgy]], [[1qcr ]]– bCyt in Bc1 complex<br />
-
**[[1kyo]] - yCyt in Bc1 complex<BR />
+
**[[6fo6]] - bCyt in Bc1 complex + antimalarial inhibitor – Cryo EM<br />
-
**[[1kb9]] – yCyt in Bc1 complex residues 17-368<BR />
+
**[[1p84]], [[1l0l]], [[6haw]], [[6xvf]] - bCyt in Bc1 complex + inhibitor <br />
-
**[[1ezv]] - yCyt in Bc1 complex + antibody FV fragment<BR />
+
**[[2fyu]] - bCyt in Bc1 complex (mutant) + inhibitor <br />
-
**[[3h1h]], [[1bcc]] - cCyt in Bc1 complex – chicken<BR />
+
**[[1sqp]], [[1sqq]], [[1sqv]], [[1sqx]], [[2a06]], [[1sqb]], [[1pp9]], [[1ppj]], [[1ntk]], [[1ntm]], [[1ntz]], [[1nu1]] - bCyt in Bc1 complex + substrate<br />
-
**[[3h1i]], [[2bcc]], [[3bcc]] - cCyt in Bc1 complex + inhibitor<BR />
+
**[[3h1h]], [[1bcc]] - cCyt in Bc1 complex – chicken<br />
-
**[[2qjk]], [[2qjp]], [[2qjy]] – RsCyt in Bc1 complex + inhibitor<BR />
+
**[[3h1i]], [[2bcc]], [[3bcc]] - cCyt in Bc1 complex + inhibitor<br />
-
**[[2fyn]] - RsCyt in Bc1 complex (mutant) <BR />
+
**[[7jrp]] - Cyt in Bc1 complex – mung bean - Cryo EM<br />
 +
**[[1kyo]], 3cx5, 3cxh – yCyt in Bc1 complex <br />
 +
**[[2ibz]] - yCyt in Bc1 complex + inhibitor<br />
 +
**[[6giq]], [[6hu9]], [[6t0b]], [[6t15]], [[6ymx]], [[6ymy]] - yCyt in Bc1 complex – Cryo EM<br />
 +
**[[1kb9]] – yCyt in Bc1 complex residues 17-368<br />
 +
**[[1ezv]] - yCyt in Bc1 complex + antibody FV fragment<br />
 +
**[[6nhg]], [[6xkt]], [[6xku]], [[6xkw]], [[6xkx]], [[6xkz]] - RsCyt in Bc1 complex – Cryo EM<br />
 +
**[[2qjk]], [[2qjp]], [[2qjy]] – RsCyt in Bc1 complex + inhibitor <br />
 +
**[[2fyn]] - RsCyt in Bc1 complex (mutant) <br />
**[[5kkz]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + fungicide<br />
**[[5kkz]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + fungicide<br />
 +
**[[6nin]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + stigmatellin <br />
**[[5kli]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + stigmatellin + antimycin<br />
**[[5kli]] - RsCyt in Bc1 complex + Ubiquinol-CytC reductase + stigmatellin + antimycin<br />
-
**[[1l0n]], [[1be3]], [[1bgy]], [[1qcr]] – bCyt in Bc1 complex<BR />
+
**[[1zrt]] - RcCyt in Bc1 complex + inhibitor <br />
-
**[[2fyu]] - bCyt in Bc1 complex (mutant) + inhibitor<BR />
+
-
**[[1sqp]], [[1sqq]], [[1sqv]], [[1sqx]], [[2a06]], [[1sqb]], [[1pp9]], [[1ppj]], [[1ntk]], [[1ntm]], [[1p84]], [[1l0l]] - bCyt in Bc1 complex + inhibitor<BR />
+
-
**[[1ntz]], [[1nu1]] - bCyt in Bc1 complex + substrate<BR />
+
-
**[[1zrt]] - RcCyt in Bc1 complex + inhibitor<br />
+
**[[2yiu]] - PdCyt in Bc1 complex – ''Paracoccus denitrificans'' <br />
**[[2yiu]] - PdCyt in Bc1 complex – ''Paracoccus denitrificans'' <br />
**[[4xxl]] – Cyt – ''Syderoxydans lithotrophicus'' <br />
**[[4xxl]] – Cyt – ''Syderoxydans lithotrophicus'' <br />
 +
**[[6xi0]], [[6xkt]] - Cyt in Bc1 complex + Ubiquinol-CytC reductase – ''Rhodobacter capsulatus'' – Cryo EM<br />
 +
**[[6kls]], [[6klv]] - AaCyt in Bc1 complex + Rieske-I protein – ''Aquifex aeolicus'' – Cryo EM<br />
*Cytochrome C2
*Cytochrome C2
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**[[1i8o]], [[1hh7]], [[1fj0]], [[1i8p]] – RpCyt<BR />
**[[1i8o]], [[1hh7]], [[1fj0]], [[1i8p]] – RpCyt<BR />
**[[1hro]] – Cyt – ''Rhodopila globiformis''<BR />
**[[1hro]] – Cyt – ''Rhodopila globiformis''<BR />
-
**[[1cot]] – PdCyt - ''Paracoccus denitrificans''<BR />
+
**[[1cot]] – PdCyt <BR />
**[[1cry]] - RvCyt<br />
**[[1cry]] - RvCyt<br />
**[[1co6]], [[1io3]] – BvCyt - ''Blastochloris viridis''
**[[1co6]], [[1io3]] – BvCyt - ''Blastochloris viridis''
Line 167: Line 179:
**[[1m6z]], [[1m70]], [[1etp]] – PsCyt – ''Pseudomonas stutzeri''<BR />
**[[1m6z]], [[1m70]], [[1etp]] – PsCyt – ''Pseudomonas stutzeri''<BR />
 +
**[[6q2u]] – PaCyt - ''Pseudomonas aeruginosa''<br />
**[[1h1o]] – Cyt - ''Acidithiobacillus ferrooxidans''
**[[1h1o]] – Cyt - ''Acidithiobacillus ferrooxidans''
*Cytochrome C5
*Cytochrome C5
 +
**[[6k7c]] – SvCyt <br />
**[[1cc5]] – Cyt – ''Azotobacter vinelandii''
**[[1cc5]] – Cyt – ''Azotobacter vinelandii''
*Cytochrome C6
*Cytochrome C6
 +
**[[1ccr]] – Cyt - rice<br />
 +
**[[2v07]], [[2dge]] – AtCyt residues 71-175 – ''Arabidopsis thaliana''<BR />
 +
**[[2ce0]], [[2ce1]] - AtCyt residues 71-175 (mutant) <BR />
**[[3ph2]] – PlCyt (mutant) – ''Phormidium laminosum''<BR />
**[[3ph2]] – PlCyt (mutant) – ''Phormidium laminosum''<BR />
**[[3dr0]], [[4eic]], [[4eie]] – SyCyt – ''Synechococcus''<BR />
**[[3dr0]], [[4eic]], [[4eie]] – SyCyt – ''Synechococcus''<BR />
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**[[3dmi]] – Cyt – ''Phaeodactylum tricornutum''<BR />
**[[3dmi]] – Cyt – ''Phaeodactylum tricornutum''<BR />
**[[2zbo]] – Cyt – ''Hizikia fusiformis''<BR />
**[[2zbo]] – Cyt – ''Hizikia fusiformis''<BR />
-
**[[2v07]], [[2dge]] – AtCyt residues 71-175 – ''Arabidopsis thaliana''<BR />
 
-
**[[2ce0]], [[2ce1]] - AtCyt residues 71-175 (mutant) <BR />
 
**[[2v08]] – PlCyt <BR />
**[[2v08]] – PlCyt <BR />
**[[1ls9]] – Cyt – ''Cladophora glomerata''<BR />
**[[1ls9]] – Cyt – ''Cladophora glomerata''<BR />
Line 190: Line 205:
**[[1c6s]] – Cyt – ''Cyanobacterium synechococcus'' - NMR<BR />
**[[1c6s]] – Cyt – ''Cyanobacterium synechococcus'' - NMR<BR />
**[[1c6o]], [[1c6r]] – Cyt – ''Scenedesmus obliquus''<br />
**[[1c6o]], [[1c6r]] – Cyt – ''Scenedesmus obliquus''<br />
-
**[[1ccr]] – Cyt - rice<br />
 
**[[4gyd]] – noCyt – nostoc<br />
**[[4gyd]] – noCyt – nostoc<br />
**[[4h0j]], [[4h0k]] – noCyt (mutant) <br />
**[[4h0j]], [[4h0k]] – noCyt (mutant) <br />
 +
**[[6tr1]], [[6tsy]] – TeCyt - ''Thermosynechococcus elongatus''<br />
*Cytochrome C7
*Cytochrome C7
Line 209: Line 224:
**[[3wu2]], [[4v82]], [[3kzi]], [[3a0b]], [[3a0h]], [[4v62]], [[1izl]], [[5ws6]], [[5ws5]], [[5v2c]], [[5gti]], [[5gth]], [[5b66]], [[5b5e]], [[4ub8]], [[4ub6]], [[4il6]] – Cyt in photosystem II – ''Thermosynechococcus vulcanus''<BR />
**[[3wu2]], [[4v82]], [[3kzi]], [[3a0b]], [[3a0h]], [[4v62]], [[1izl]], [[5ws6]], [[5ws5]], [[5v2c]], [[5gti]], [[5gth]], [[5b66]], [[5b5e]], [[4ub8]], [[4ub6]], [[4il6]] – Cyt in photosystem II – ''Thermosynechococcus vulcanus''<BR />
 +
**[[7d1t]], [[7d1u]] – TvCyt in photosystem II – Cyo EM<br />
**[[2axt]], [[1w5c]], [[1s5l]], [[5h2f]], [[5tis]], [[5mx2]], [[5kai]], [[5kaf]], [[5e7c]], [[5e79]], [[4tnk]], [[4tnj]], [[4tni]], [[4tnh]], [[4rvy]], [[4pj0]], [[4pbu]], [[4ixr]], [[4ixq]], [[4fby]] - TeCyt in photosystem II – ''Thermosynechococcus elongatus''<BR />
**[[2axt]], [[1w5c]], [[1s5l]], [[5h2f]], [[5tis]], [[5mx2]], [[5kai]], [[5kaf]], [[5e7c]], [[5e79]], [[4tnk]], [[4tnj]], [[4tni]], [[4tnh]], [[4rvy]], [[4pj0]], [[4pbu]], [[4ixr]], [[4ixq]], [[4fby]] - TeCyt in photosystem II – ''Thermosynechococcus elongatus''<BR />
**[[2bgv]] – PvCyt – ''Paracoccus versutus''<BR />
**[[2bgv]] – PvCyt – ''Paracoccus versutus''<BR />
Line 222: Line 238:
**[[1gks]] – Cyt – ''Ectothiorhodospira halophila'' - NMR<BR />
**[[1gks]] – Cyt – ''Ectothiorhodospira halophila'' - NMR<BR />
**[[1new]] – DaCyt triheme]- NMR<BR />
**[[1new]] – DaCyt triheme]- NMR<BR />
-
**[[351c]], [[451c]], [[3x39]] - PaCyt - ''Pseudomonas aeruginosa''<BR />
+
**[[351c]], [[451c]], [[3x39]] - PaCyt <BR />
**[[2exv]] – PaCyt (mutant) <BR />
**[[2exv]] – PaCyt (mutant) <BR />
**[[2pac]] – PaCyt - NMR<BR />
**[[2pac]] – PaCyt - NMR<BR />
Line 250: Line 266:
*Cytochrome C555
*Cytochrome C555
-
**[[2zxy]] – Cyt – ''Aquifex aeolicus''<BR />
+
**[[2zxy]] – AaCyt <BR />
**[[2yk3]] – Cyt – ''Crithidia fasciculate''<br />
**[[2yk3]] – Cyt – ''Crithidia fasciculate''<br />
**[[4j20]] – CtCyt (mutant)<br />
**[[4j20]] – CtCyt (mutant)<br />

Revision as of 08:27, 20 June 2021

3D structures of cytochrome C

Updated on 20-June-2021

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman

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