2qor
From Proteopedia
(Difference between revisions)
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==Crystal structure of Plasmodium vivax guanylate kinase== | ==Crystal structure of Plasmodium vivax guanylate kinase== | ||
| - | <StructureSection load='2qor' size='340' side='right' caption='[[2qor]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='2qor' size='340' side='right'caption='[[2qor]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2qor]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2qor]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Plavi Plavi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QOR FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gky|1gky]], [[1ex6|1ex6]], [[1ex7|1ex7]], [[2anc|2anc]], [[2anb|2anb]], [[2an9|2an9]], [[2f3r|2f3r]], [[1s96|1s96]], [[2f3t|2f3t]], [[1znw|1znw]], [[1znx|1znx]], [[1zny|1zny]], [[1s4q|1s4q]], [[1znz|1znz]], [[1z8f|1z8f]], [[1z6g|1z6g]], [[1lvg|1lvg]], [[2j41|2j41]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gky|1gky]], [[1ex6|1ex6]], [[1ex7|1ex7]], [[2anc|2anc]], [[2anb|2anb]], [[2an9|2an9]], [[2f3r|2f3r]], [[1s96|1s96]], [[2f3t|2f3t]], [[1znw|1znw]], [[1znx|1znx]], [[1zny|1zny]], [[1s4q|1s4q]], [[1znz|1znz]], [[1z8f|1z8f]], [[1z6g|1z6g]], [[1lvg|1lvg]], [[2j41|2j41]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pv099895, PVX_099895 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pv099895, PVX_099895 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5855 PLAVI])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Guanylate_kinase Guanylate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.8 2.7.4.8] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qor FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qor OCA], [https://pdbe.org/2qor PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qor RCSB], [https://www.ebi.ac.uk/pdbsum/2qor PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qor ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/2qor_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qo/2qor_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qor ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qor ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Guanylate kinase 3D structures|Guanylate kinase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Guanylate kinase]] | [[Category: Guanylate kinase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Plavi]] | [[Category: Plavi]] | ||
[[Category: Merritt, E A]] | [[Category: Merritt, E A]] | ||
Revision as of 08:27, 25 June 2021
Crystal structure of Plasmodium vivax guanylate kinase
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