2rdb
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase I100W Mutant== | ==X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase I100W Mutant== | ||
- | <StructureSection load='2rdb' size='340' side='right' caption='[[2rdb]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='2rdb' size='340' side='right'caption='[[2rdb]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2rdb]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2rdb]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_sewerinii"_bergey_et_al._1923 "achromobacter sewerinii" bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDB FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPO:3[N-MORPHOLINO]PROPANE+SULFONIC+ACID'>MPO</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2inc|2inc]], [[2ind|2ind]], [[1t0q|1t0q]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2inc|2inc]], [[2ind|2ind]], [[1t0q|1t0q]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">touA ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">touA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316 "Achromobacter sewerinii" Bergey et al. 1923]), touE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316 "Achromobacter sewerinii" Bergey et al. 1923]), touB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316 "Achromobacter sewerinii" Bergey et al. 1923])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdb OCA], [https://pdbe.org/2rdb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdb RCSB], [https://www.ebi.ac.uk/pdbsum/2rdb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdb ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
Line 13: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdb_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdb_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Line 28: | Line 28: | ||
</div> | </div> | ||
<div class="pdbe-citations 2rdb" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 2rdb" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Monooxygenase 3D structures|Monooxygenase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
Line 33: | Line 36: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Achromobacter sewerinii bergey et al. 1923]] | [[Category: Achromobacter sewerinii bergey et al. 1923]] | ||
+ | [[Category: Large Structures]] | ||
[[Category: Davydov, R]] | [[Category: Davydov, R]] | ||
[[Category: Garcia-Serres, R]] | [[Category: Garcia-Serres, R]] |
Revision as of 04:22, 2 July 2021
X-ray Crystal Structure of Toluene/o-Xylene Monooxygenase Hydroxylase I100W Mutant
|
Categories: Achromobacter sewerinii bergey et al. 1923 | Large Structures | Davydov, R | Garcia-Serres, R | Hoffman, B M | Huynh, B H | Lippard, S J | McCormick, M S | Murray, L J | Naik, S | 4-helix bundle | Carboxylate bridge | Diiron | Metalloenzyme | Monooxygenase | Oxidoreductase | Tryptophan radical