DNA polymerase 3D structures
From Proteopedia
(Difference between revisions)
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**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo I + DNA – ''Pyrococcus abyssi''<br /> | **[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo I + DNA – ''Pyrococcus abyssi''<br /> | ||
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br /> | **[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br /> | ||
| - | **[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br /> | + | **[[6dsy]], [[6dsx]], [[6dsw]], [[6dsv]], [[6dsu]], [[7k5o]], [[7k5p]], [[7k5r]], [[7k5s]], [[7k5u]] - GsDpo I + DNA - ''Geobacillus stearothermophilus''<br /> |
**[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br /> | **[[3eyz]], [[6p5c]] - GsDpo I (mutant) + DNA <br /> | ||
**[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br /> | **[[6mu5]], [[6mu4]], [[6ur2]], [[6ur4]] - GsDpo I + DNA + nucleotide derivative <br /> | ||
**[[3eyz]] - GsDpo I (mutant) + DNA <br /> | **[[3eyz]] - GsDpo I (mutant) + DNA <br /> | ||
| - | **[[3ez5]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br /> | + | **[[3ez5]], [[6ueu]], [[6ur9]], [[6us5]] - GsDpo I (mutant) + DNA + nucleotide <br /> |
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br /> | **[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br /> | ||
**[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br /> | **[[6vdc]], [[6vde]] – MsPol I – ''Mycobacterium smegmatis''<br /> | ||
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**[[6hmf]] - PaDpo II small subunit (mutant)<br /> | **[[6hmf]] - PaDpo II small subunit (mutant)<br /> | ||
**[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br /> | **[[6hms]] - PaDpo II small+large subunits + DNA – Cryo EM <br /> | ||
| + | **[[6knb]], [[6knc]] - TkPol II small+large subunits + PCNA + DNA - ''Thermococcus kodakarensis'' – Cryo EM <br /> | ||
*DNA polymerase III subunit α | *DNA polymerase III subunit α | ||
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**[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III β subunit – ''Caulobacter crescentus''<br /> | **[[5wyp]], [[5wce]], [[6izo]], [[6jir]] - Dpo III β subunit – ''Caulobacter crescentus''<br /> | ||
**[[5w7z]] - RcDpo III β subunit – ''Rickettsia conorii''<br /> | **[[5w7z]] - RcDpo III β subunit – ''Rickettsia conorii''<br /> | ||
| - | **[[6man]] - Dpo III β subunit – Rickettsia bellii<br /> | + | **[[6man]] - Dpo III β subunit – ''Rickettsia bellii''<br /> |
| - | **[[6d46]] - RtDpo III β subunit – Rickettsia typhi<br /> | + | **[[6d46]] - RtDpo III β subunit – ''Rickettsia typhi''<br /> |
| + | **[[6dlk]] - Dpo III subunit – ''Rickettsia rickettsii''<br /> | ||
| + | **[[6d47]] - Dpo III subunit – ''Mycobacterium marinum''<br /> | ||
**[[1jqj]], [[1jql]] - EcDpo III subunit β,γ(mutant) <br /> | **[[1jqj]], [[1jql]] - EcDpo III subunit β,γ(mutant) <br /> | ||
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br /> | **[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br /> | ||
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**[[4s3i]], [[4rki]] - HpPol III β subunit – ''Helicobacter pylori''<br /> | **[[4s3i]], [[4rki]] - HpPol III β subunit – ''Helicobacter pylori''<br /> | ||
**[[6aig]] - Dpo III β subunit – ''Aeropyrum pernix''<br /> | **[[6aig]] - Dpo III β subunit – ''Aeropyrum pernix''<br /> | ||
| + | **[[6deg]] - Dpo III subunit – ''Bartonella birtlesii''<br /> | ||
*DNA polymerase III subunit beta or sliding clamp complex | *DNA polymerase III subunit beta or sliding clamp complex | ||
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**[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br /> | **[[6jup]], [[6juq]] - EcPol IV (mutant) + DNA + nucleotide<br /> | ||
**[[2rdi]] - SsPol IV <br /> | **[[2rdi]] - SsPol IV <br /> | ||
| + | **[[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[2xca]], [[2xcp]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4ruc]], [[4rua]], [[4tqr]], [[4tqs]], [[5edw]], [[6vgm]] - SsPol IV + DNA + nucleotide<br /> | ||
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br /> | **[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br /> | ||
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4tqr]], [[4tqs]] - SsPol IV + DNA + nucleotide<br /> | **[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4tqr]], [[4tqs]] - SsPol IV + DNA + nucleotide<br /> | ||
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br /> | **[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]], [[4rzr]], [[6l84]], [[6l97]] - SsPol IV + DNA<br /> | ||
| - | **[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]], [[5edw]], [[4ruc]], [[4rua]] - SsPol IV + DNA + nucleotide<br /> | ||
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br /> | **[[3fds]] – SsPol IV + PCNA B + PCNA C<br /> | ||
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br /> | **[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br /> | ||
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*DNA polymerase | *DNA polymerase | ||
| - | **[[2gv9]] – | + | **[[2gv9]] – HsvDpo – Herpes simplex virus<br /> |
| + | **[[7luf]] – HsvDpo + DNA<br /> | ||
**[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br /> | **[[5n2g]], [[5n2e]] – VvDpo – Vaccinia virus<br /> | ||
**[[5n2h]] – VvDpo (mutant) <br /> | **[[5n2h]] – VvDpo (mutant) <br /> | ||
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**[[4ail]] – PfDpo + DNA<br /> | **[[4ail]] – PfDpo + DNA<br /> | ||
**[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br /> | **[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br /> | ||
| - | **[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br /> | ||
**[[2vwk]] - TgDpo (mutant) <br /> | **[[2vwk]] - TgDpo (mutant) <br /> | ||
| + | **[[7b0h]] – TgDpo + DNA <br /> | ||
| + | **[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br /> | ||
**[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br /> | **[[1wn7]], [[1wns]], [[5vu5]] – TkDpo B <br /> | ||
**[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br /> | **[[5vu9]], [[5vu8]], [[5vu7]], [[5vu6]], [[5omf]] - TkDpo + DNA<br /> | ||
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*DNA polymerase β | *DNA polymerase β | ||
| - | **[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br /> | ||
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br /> | **[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br /> | ||
| - | ** | + | **[[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[1zqe]], [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4pgy]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]], [[5wo0]], [[5wnz]], [[5wny]], [[5wnx]], [[5vs4]], [[5vs3]], [[5vs2]], [[5vs1]], [[5vs0]], [[5vrz]], [[5vry]], [[5vrx]], [[5vrw]], [[5vez]], [[5v1r]], [[5v1p]], [[5v1o]], [[5v1n]], [[5v1j]], [[5v1i]], [[5v1h]], [[5v1g]], [[5v1f]], [[5ugp]], [[5ugo]], [[5ugn]], [[5u9h]], [[5u8i]], [[5u8h]], [[5u8g]], [[5u2t]], [[5u2s]], [[5u2r]], [[5tzv]], [[5tbc]], [[5tbb]], [[5tba]], [[5tb9]], [[5tb8]], [[5j2k]], [[5j2j]], [[5j2i]], [[5j2h]], [[5j2g]], [[5j2f]], [[5j2e]], [[5j2d]], [[5j2c]], [[5j2b]], [[5j2a]], [[5j29]], [[5j0y]], [[5j0x]], [[5j0w]], [[5j0u]], [[5j0t]], [[5j0s]], [[5j0r]], [[5j0q]], [[5j0p]], [[5j0o]], [[5dbc]], [[5dbb]], [[5dba]], [[5db9]], [[5db8]], [[5db7]], [[5db6]], [[6g2q]], [[6ph5]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icg]], [[7ich]], [[7icj]], [[7ick]], [[7icm]], [[7icn]], [[7ico]], [[7icp]], [[7icq]], [[7icr]], [[7ics]], [[7ict]], [[7icu]], [[7icv]], [[7k97]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]] - hDpo + DNA<br /> |
| - | + | **[[1bpy]], [[1mq2]], [[1mq3]], [[1zjn1]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]], [[4z6f]], [[4z6e]], [[4z6d]], [[4z6c]], [[4yn4]], [[4ymo]], [[4ymn]], [[4ymm]], [[4rt3]], [[4rt2]], [[4rq8]], [[4rq7]], [[4rq6]], [[4rq5]], [[4rq4]], [[4rq3]], [[4rq2]], [[4rq1]], [[4rq0]], [[4rpz]], [[4rpy]], [[4rpx]], [[4php]], [[4phe]], [[4ph5]], [[5eoz]], [[5bpc]], [[5bom]], [[5bol]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icy]], [[8icz]], [[9ica]], [[9icb]], [[9icc]], [[9ice]], [[9icf]], [[9icg]], [[9ich]], [[9ici]], [[9icn]], [[9ico]] [[9icq]], [[9icr]], [[9ics]], [[9ict]], [[9icu]], [[9icv]] - hDpo + DNA + nucleotide<br /> | |
| - | + | **[[2p66]], [[4f5n]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], | |
| + | [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6ph6]], [[6u2o]], [[6u6b]], [[6uok]], [[6uol]], [[6uom]], [[7k96]] - hDpo + DNA + nucleotide analog<br /> | ||
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo β (mutant) + DNA + nucleotide analog<br /> | **[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]], [[6n2t]], [[6n2s]], [[6n2r]], [[6mr8]], [[6mr7]], [[6e3x]], [[6e3w]], [[6e3v]], [[6e3r]], [[6dia]], [[6cub]], [[6cua]], [[6cu9]], [[6ctx]], [[6ctw]], [[6ctv]], [[6ctu]], [[6ctt]], [[6ctr]], [[6ctq]], [[6ctp]], [[6cto]], [[6ctn]], [[6ctm]], [[6ctl]], [[6ctk]], [[6ctj]], [[6cti]], [[6crh]], [[6crc]], [[6crb]], [[6cr9]], [[6cr8]], [[6cr7]], [[6cr6]], [[6cr5]], [[6cr4]], [[6cr3]], [[6cpq]], [[6cly]], [[6bem]], [[6bel]], [[6dic]], [[6btf]], [[6bte]], [[6nkr]], [[6nks]], [[6nkt]], [[6nku]], [[6nkv]], [[6nkw]], [[6nkx]], [[6nky]], [[6nkz]], [[6nl0]], [[6pkz]] - hDpo β (mutant) + DNA + nucleotide analog<br /> | ||
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo β (mutant) + DNA<br /> | **[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo β (mutant) + DNA<br /> | ||
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**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br /> | **[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br /> | ||
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />β | **[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />β | ||
| + | **[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br /> | ||
*DNA polymerase γ | *DNA polymerase γ | ||
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**[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br /> | **[[6s1m]], [[6s1n]], [[6s1o]], [[6tny]] - hDpo δ subunits catalytic+2+3+4 + PCNA + DNA + nucleotide analog – Cryo EM<br /> | ||
**[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br /> | **[[6tnz]] - hDpo δ subunits catalytic+2+3+4 + PCNA + FLAP endonuclease +DNA + nucleotide analog – Cryo EM<br /> | ||
| + | **[[7kc0]] - hDpo δ + PCNA + POL31 + POL32 +DNA + nucleotide analog – Cryo EM<br /> | ||
*DNA polymerase ε | *DNA polymerase ε | ||
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**[[3abd]], [[3abe]] - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br /> | **[[3abd]], [[3abe]] - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br /> | ||
| - | **[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo | + | **[[6ekm]], [[6bi7]], [[6bcd]], [[6bc8]] - hDpo ζ catalytic subunit + MAD2B<br /> |
| - | **[[3vu7]], [[4gk0]] - hDpo | + | **[[3vu7]], [[4gk0]], [[6ws0]] - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> |
| - | **[[4fjo]], [[4gk5]] - hDpo κ + hDpo | + | **[[6ws5]] - hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B + inhibitor<br /> |
| + | **[[4fjo]], [[4gk5]] - hDpo κ + hDpo ζ catalytic subunit + DNA repair protein Rev1 + MAD2B<br /> | ||
| + | **[[6v8p]] - hDpo ζ catalytic subunit + hDpo d subunits 3+small – Cryo EM<br /> | ||
| + | **[[6v93]] - hDpo ζ catalytic+processivity subunits + hDpo d subunits 3+small + DNA + dCTP – Cryo EM<br /> | ||
*DNA polymerase η | *DNA polymerase η | ||
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**[[2lsj]], [[2lsi]] - hDpo η + DNA repair protein Rev1<br /> | **[[2lsj]], [[2lsi]] - hDpo η + DNA repair protein Rev1<br /> | ||
**[[6mp3]] - hDpo η + DNA <br /> | **[[6mp3]] - hDpo η + DNA <br /> | ||
| - | **[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]] - hDpo η + DNA + nucleotide<br /> | + | **[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[3si8]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]], [[5l9x]], [[5l1l]], [[5l1k]], [[5l1j]], [[5l1i]], [[5kg7]], [[5kg6]], [[5kg5]], [[5kg4]], [[5kg3]], [[5kg2]], [[5kg1]], [[5kg0]], [[5kfz]], [[5kfy]], [[5kfx]], [[5kfw]], [[5kfv]], [[5kfu]], [[5kft]], [[5kfs]], [[5kfr]], [[5kfq]], [[5kfp]], [[5kfo]], [[5kfn]], [[5kfm]], [[5kfl]], [[5kfk]], [[5kfj]], [[5kfi]], [[5kfh]], [[5kfg]], [[5kff]], [[5kfe]], [[5kfd]], [[5kfc]], [[5kfb]], [[5kfa]], [[5jum]], [[5f9n]], [[5f9l]], [[5ewg]], [[5ewf]], [[5ewe]], [[5dqi]], [[5dqh]], [[5dqg]], [[5dlg]], [[5dlf]], [[5dgb]], [[5dga]], [[5dg9]], [[5dg8]], [[5dg7]], [[4yr3]], [[4yr2]], [[4yr0]], [[4yqw]], [[4yp3]], [[4ru9]], [[6mxo]], [[6m7v]], [[6m7u]], [[6m7t]], [[6m7p]], [[6m7o]], [[6d0z]], [[6d0m]], [[6mq8]], [[6pl7]], [[6pl8]], [[6plc]], [[6ui2]], [[6uqi]], [[6v5k]], [[6wk6]] - hDpo η + DNA + nucleotide<br /> |
**[[6pz3]], [[6q02]] - hDpo η (mutant) + DNA + nucleotide<br /> | **[[6pz3]], [[6q02]] - hDpo η (mutant) + DNA + nucleotide<br /> | ||
| Line 334: | Line 345: | ||
**[[6ak5]] - hDpo μ residues 132-397+411-494 + nucleotide derivative<br /> | **[[6ak5]] - hDpo μ residues 132-397+411-494 + nucleotide derivative<br /> | ||
**[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo μ residues 132-397+411-494 (mutant) + nucleotide derivative<br /> | **[[6ipn]], [[6ipm]], [[6ipl]], [[6ipk]], [[6ipj]], [[6ipi]], [[6iph]], [[6aec]], [[6aeh]], [[6ak6]] - hDpo μ residues 132-397+411-494 (mutant) + nucleotide derivative<br /> | ||
| + | **[[7coa]] - hDpo μ + DNA + nucleotide derivative<br /> | ||
**[[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]] - hDpo μ residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br /> | **[[4yd1]], [[6ipg]], [[6ipf]], [[6ipe]], [[6ipd]], [[5vz7]], [[5vz8]], [[5vz9]], [[5vza]], [[5vzb]], [[5vzc]], [[5vzd]], [[5vze]], [[5vzf]], [[5vzg]], [[5vzh]], [[5vzi]], [[6ak8]], [[6ak9]], [[6akh]], [[6p1m]], [[6p1n]], [[6p1o]], [[6p1p]], [[6p1q]], [[6p1r]], [[6p1s]], [[6p1t]], [[6p1u]], [[6p1v]], [[6p1w]] - hDpo μ residues 132-494+411-494 (mutant) + DNA + nucleotide derivative<br /> | ||
**[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br /> | **[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br /> | ||
| Line 351: | Line 363: | ||
*DNA polymerase θ | *DNA polymerase θ | ||
| - | **[[5a9j]] – hDpo helicase domain<br /> | + | **[[5a9j]] – hDpo helicase domain 1-894<br /> |
**[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br /> | **[[5a9f]], [[5aga]] – hDpo helicase domain + nucleotide<br /> | ||
**[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br /> | **[[4x0p]], [[4x0q]] – hDpo helicase domain + nucleotide + DNA<br /> | ||
| + | **[[6xbu]] – hDpo polymerase domain 1819-2590 + nucleotide + DNA<br /> | ||
*DNA polymerase from yeast | *DNA polymerase from yeast | ||
| Line 376: | Line 389: | ||
**[[6h1v]] - yDpo ε catalytic domain (mutant) + DNA + nucleotide <br /> | **[[6h1v]] - yDpo ε catalytic domain (mutant) + DNA + nucleotide <br /> | ||
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br /> | **[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br /> | ||
| + | **[[7lxd]] - yDpo ζ catalytic+processivity subunits + hDpo d subunits 3+small – Cryo EM<br /> | ||
**[[5y27]], [[5y26]] - Dpo ε subunit D + transcription factor – fission yeast<br /> | **[[5y27]], [[5y26]] - Dpo ε subunit D + transcription factor – fission yeast<br /> | ||
**[[1jih]], [[5vtp]] – yDpo η catalytic domain<br /> | **[[1jih]], [[5vtp]] – yDpo η catalytic domain<br /> | ||
| - | **[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br /> | ||
*DNA polymerase Rev1 | *DNA polymerase Rev1 | ||
Revision as of 08:32, 6 July 2021
3D Structures of DNA polymerase
Updated on 06-July-2021
6ctq, 6ctp, 6cto, 6ctn, 6ctm, 6ctl, 6ctk, 6ctj, 6cti, 6crh, 6crc, 6crb, 6cr9, 6cr8, 6cr7, 6cr6, 6cr5, 6cr4, 6cr3, 6cpq, 6cly, 6bem, 6bel, 6ph6, 6u2o, 6u6b, 6uok, 6uol, 6uom, 7k96 - hDpo + DNA + nucleotide analog
Terminal deoxynucleotidyl transferase ternary complex with DNA
