7mie
From Proteopedia
(Difference between revisions)
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==Crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP== | ==Crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP== | ||
- | <StructureSection load='7mie' size='340' side='right'caption='[[7mie]]' scene=''> | + | <StructureSection load='7mie' size='340' side='right'caption='[[7mie]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MIE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MIE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7mie]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35210 Atcc 35210]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MIE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MIE FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mie OCA], [https://pdbe.org/7mie PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mie RCSB], [https://www.ebi.ac.uk/pdbsum/7mie PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mie ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BB_0733 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=139 ATCC 35210])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mie OCA], [https://pdbe.org/7mie PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mie RCSB], [https://www.ebi.ac.uk/pdbsum/7mie PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mie ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | In the tick-borne pathogens, Borreliella burgdorferi and Borrelia hermsii, c-di-GMP is produced by a single diguanylate cyclase (Rrp1). In these pathogens, the Plz proteins (PlzA, B and C) are the only c-di-GMP receptors identified to date and PlzA is the sole c-di-GMP receptor found in all Borreliella isolates. Bioinformatic analyses suggest that PlzA has a unique PilZN3-PilZ architecture with the relatively uncommon xPilZ domain. Here, we present the crystal structure of PlzA in complex with c-di-GMP (1.6 A resolution). This is the first structure of a xPilz domain in complex with c-di-GMP to be determined. PlzA has a two-domain structure, where each domain comprises topologically equivalent PilZ domains with minimal sequence identity but remarkable structural similarity. The c-di-GMP binding site is formed by the linker connecting the two domains. While the structure of apo PlzA could not be determined, previous fluorescence resonance energy transfer data suggest that apo and holo forms of the protein are structurally distinct. The information obtained from this study will facilitate ongoing efforts to identify the molecular mechanisms of PlzA-mediated regulation in ticks and mammals. | ||
+ | |||
+ | High-resolution crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP: new insights into the interaction of c-di-GMP with the novel xPilZ domain.,Singh A, Izac JR, Schuler EJA, Patel DT, Davies C, Marconi RT Pathog Dis. 2021 Jun 29;79(5). pii: 6297269. doi: 10.1093/femspd/ftab030. PMID:34117751<ref>PMID:34117751</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7mie" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Atcc 35210]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Davies C]] | + | [[Category: Davies, C]] |
- | [[Category: Singh A]] | + | [[Category: Singh, A]] |
+ | [[Category: Borreliella burgdorferi]] | ||
+ | [[Category: C-di-gmp-binding receptor signaling]] | ||
+ | [[Category: Pilz domain]] | ||
+ | [[Category: Signaling protein]] | ||
+ | [[Category: Tick-borne pathogen]] |
Revision as of 10:15, 14 July 2021
Crystal structure of the Borreliella burgdorferi PlzA protein in complex with c-di-GMP
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