1ex8

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[[Image:1ex8.gif|left|200px]]
[[Image:1ex8.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1ex8 |SIZE=350|CAPTION= <scene name='initialview01'>1ex8</scene>, resolution 1.85&Aring;
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The line below this paragraph, containing "STRUCTURE_1ex8", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=A4P:6-(ADENOSINE+TETRAPHOSPHATE-METHYL)-7,8-DIHYDROPTERIN'>A4P</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_diphosphokinase 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.6.3 2.7.6.3] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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|DOMAIN=
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{{STRUCTURE_1ex8| PDB=1ex8 | SCENE= }}
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|RELATEDENTRY=[[1hka|1HKA]], [[1eqm|1EQM]], [[1eq0|1EQ0]], [[1eqo|1EQO]], [[1cbk|1CBK]], [[1dy3|1DY3]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ex8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ex8 OCA], [http://www.ebi.ac.uk/pdbsum/1ex8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ex8 RCSB]</span>
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}}
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'''CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH HP4A, THE TWO-SUBSTRATE-MIMICKING INHIBITOR'''
'''CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH HP4A, THE TWO-SUBSTRATE-MIMICKING INHIBITOR'''
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[[Category: Blaszczyk, J.]]
[[Category: Blaszczyk, J.]]
[[Category: Ji, X.]]
[[Category: Ji, X.]]
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[[Category: active-site architecture]]
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[[Category: Active-site architecture]]
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[[Category: antimicrobial agent]]
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[[Category: Antimicrobial agent]]
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[[Category: atp]]
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[[Category: Atp]]
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[[Category: bisubstrate-mimicking inhibitor]]
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[[Category: Bisubstrate-mimicking inhibitor]]
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[[Category: drug design]]
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[[Category: Drug design]]
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[[Category: folate]]
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[[Category: Folate]]
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[[Category: hppk]]
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[[Category: Hppk]]
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[[Category: pterin]]
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[[Category: Pterin]]
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[[Category: pyrophosphokinase]]
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[[Category: Pyrophosphokinase]]
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[[Category: pyrophosphoryl transfer]]
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[[Category: Pyrophosphoryl transfer]]
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[[Category: substrate specificity]]
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[[Category: Substrate specificity]]
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[[Category: x-ray crystallography]]
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[[Category: X-ray crystallography]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May 2 15:37:36 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 20:11:27 2008''
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Revision as of 12:37, 2 May 2008

Image:1ex8.gif

Template:STRUCTURE 1ex8

CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH HP4A, THE TWO-SUBSTRATE-MIMICKING INHIBITOR


Overview

6-Hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) catalyzes the transfer of pyrophosphate from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP), leading to the biosynthesis of folate cofactors. Like other enzymes in the folate pathway, HPPK is an ideal target for the development of antimicrobial agents because the enzyme is essential for microorganisms but is absent from human and animals. Three bisubstrate analogues have been synthesized for HPPK and characterized by biochemical and X-ray crystallographic analyses. All three bisubstrate analogues consist of a pterin, an adenosine moiety, and a link composed of 2-4 phosphoryl groups. P(1)-(6-Hydroxymethylpterin)-P(2)-(5'-adenosyl)diphosphate (HP(2)A, 5) shows little affinity and inhibitory activity for E. coli HPPK. P(1)-(6-Hydroxymethylpterin)-P(3)-(5'-adenosyl)triphosphate (HP(3)A, 6) shows moderate affinity and inhibitory activity with K(d) = 4.25 microM in the presence of Mg(2+) and IC(50) = 1.27 microM. P(1)-(6-Hydroxymethylpterin)-P(4)-(5'-adenosyl)tetraphosphate (HP(4)A, 7) shows the highest affinity and inhibitory activity with K(d) = 0.47 microM in the presence of Mg(2+) and IC(50) = 0.44 microM. The affinity of MgHP(4)A for HPPK is approximately 116 and 76 times higher than that of MgADP and 6-hydroxymethylpterin, respectively. The crystal structure of HPPK in complex with 7 (HPPK.MgHP(4)A) has been determined at 1.85 A resolution with a crystallographic R factor of 0.185. The crystal structure shows that 7 occupies both HP- and ATP-binding sites and induces significant conformational changes in HPPK. The biochemical and structural studies of the bisubstrate analogues indicate that the bisubstrate analogue approach can produce more potent inhibitors for HPPK and the minimum length of the link for a bisubstrate analogue is approximately 7 A.

About this Structure

1EX8 is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies., Shi G, Blaszczyk J, Ji X, Yan H, J Med Chem. 2001 Apr 26;44(9):1364-71. PMID:11311059 Page seeded by OCA on Fri May 2 15:37:36 2008

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