7mer
From Proteopedia
(Difference between revisions)
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==Structure of ALDH4A1 complexed with trans-4-Hydroxy-L-proline== | ==Structure of ALDH4A1 complexed with trans-4-Hydroxy-L-proline== | ||
- | <StructureSection load='7mer' size='340' side='right'caption='[[7mer]]' scene=''> | + | <StructureSection load='7mer' size='340' side='right'caption='[[7mer]], [[Resolution|resolution]] 1.74Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MER FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7mer]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MER FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mer OCA], [https://pdbe.org/7mer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mer RCSB], [https://www.ebi.ac.uk/pdbsum/7mer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mer ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Aldh4a1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/L-glutamate_gamma-semialdehyde_dehydrogenase L-glutamate gamma-semialdehyde dehydrogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.88 1.2.1.88] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mer OCA], [https://pdbe.org/7mer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mer RCSB], [https://www.ebi.ac.uk/pdbsum/7mer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mer ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/AL4A1_MOUSE AL4A1_MOUSE]] Irreversible conversion of delta-1-pyrroline-5-carboxylate (P5C), derived either from proline or ornithine, to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes (By similarity). | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Aldehyde dehydrogenase 4A1 (ALDH4A1) catalyzes the final steps of both proline and hydroxyproline catabolism. It is a dual substrate enzyme that catalyzes the NAD(+) -dependent oxidations of L-glutamate-gamma-semialdehyde to L-glutamate (proline metabolism), and 4-hydroxy-L-glutamate-gamma-semialdehyde to 4-erythro-hydroxy-L-glutamate (hydroxyproline metabolism). Here we investigated the inhibition of mouse ALDH4A1 by the six stereoisomers of proline and 4-hydroxyproline using steady-state kinetics and X-ray crystallography. Trans-4-hydroxy-L-proline is the strongest of the inhibitors studied, characterized by a competitive inhibition constant of 0.7 mM, followed by L-proline (1.9 mM). The other compounds are very weak inhibitors (approximately 10 mM or greater). Insight into the selectivity for L-stereoisomers was obtained by solving crystal structures of ALDH4A1 complexed with trans-4-hydroxy-L-proline and trans-4-hydroxy-D-proline. The structures suggest that the 10-fold greater preference for the L-stereoisomer is due to a serine residue that hydrogen bonds to the amine group of trans-4-hydroxy-L-proline. In contrast, the amine group of the D-stereoisomer lacks a direct interaction with the enzyme due to a different orientation of the pyrrolidine ring. These results suggest that hydroxyproline catabolism is subject to substrate inhibition by trans-4-hydroxy-L-proline, analogous to the known inhibition of proline catabolism by L-proline. Also, drugs targeting the first enzyme of hydroxyproline catabolism, by elevating the level of trans-4-hydroxy-L-proline, may inadvertently impair proline catabolism by the inhibition of ALDH4A1. | ||
+ | |||
+ | Structural basis for the stereospecific inhibition of the dual proline/hydroxyproline catabolic enzyme ALDH4A1 by trans-4-hydroxy-L-proline.,Bogner AN, Stiers KM, McKay CM, Becker DF, Tanner JJ Protein Sci. 2021 May 28. doi: 10.1002/pro.4131. PMID:34048122<ref>PMID:34048122</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7mer" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: L-glutamate gamma-semialdehyde dehydrogenase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Bogner | + | [[Category: Lk3 transgenic mice]] |
- | [[Category: Stiers | + | [[Category: Bogner, A N]] |
- | [[Category: Tanner | + | [[Category: Stiers, K M]] |
+ | [[Category: Tanner, J J]] | ||
+ | [[Category: Acting on aldehyde or oxo group of donor]] | ||
+ | [[Category: Aldehyde dehydrogenase]] | ||
+ | [[Category: Mitochondria]] | ||
+ | [[Category: Nad or nadp as acceptor]] | ||
+ | [[Category: Nucleotide binding]] | ||
+ | [[Category: Oxidoreductase]] | ||
+ | [[Category: Rossmann fold]] |
Revision as of 10:54, 28 July 2021
Structure of ALDH4A1 complexed with trans-4-Hydroxy-L-proline
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Categories: L-glutamate gamma-semialdehyde dehydrogenase | Large Structures | Lk3 transgenic mice | Bogner, A N | Stiers, K M | Tanner, J J | Acting on aldehyde or oxo group of donor | Aldehyde dehydrogenase | Mitochondria | Nad or nadp as acceptor | Nucleotide binding | Oxidoreductase | Rossmann fold