7aqm

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==ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with alpha-1''-O-methyl-ADP-ribose (meADPr)==
==ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with alpha-1''-O-methyl-ADP-ribose (meADPr)==
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<StructureSection load='7aqm' size='340' side='right'caption='[[7aqm]]' scene=''>
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<StructureSection load='7aqm' size='340' side='right'caption='[[7aqm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7AQM FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7aqm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Coelacanth Coelacanth]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7AQM FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7aqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aqm OCA], [https://pdbe.org/7aqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7aqm RCSB], [https://www.ebi.ac.uk/pdbsum/7aqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7aqm ProSAT]</span></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=RVK:Adenosine+5-diphosphoric+acid+beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl)methyl]+estere'>RVK</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ADPRHL2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7897 Coelacanth])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7aqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7aqm OCA], [https://pdbe.org/7aqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7aqm RCSB], [https://www.ebi.ac.uk/pdbsum/7aqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7aqm ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Poly(ADP-ribosyl)ation (PAR) is a versatile and complex posttranslational modification composed of repeating units of ADP-ribose arranged into linear or branched polymers. This scaffold is linked to the regulation of many of cellular processes including the DNA damage response, alteration of chromatin structure and Wnt signalling. Despite decades of research, the principles and mechanisms underlying all steps of PAR removal remain actively studied. In this work, we synthesise well-defined PAR branch point molecules and demonstrate that PARG, but not ARH3, can resolve this distinct PAR architecture. Structural analysis of ARH3 in complex with dimeric ADP-ribose as well as an ADP-ribosylated peptide reveal the molecular basis for the hydrolysis of linear and terminal ADP-ribose linkages. We find that ARH3-dependent hydrolysis requires both rearrangement of a catalytic glutamate and induction of an unusual, square-pyramidal magnesium coordination geometry.
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Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal.,Rack JGM, Liu Q, Zorzini V, Voorneveld J, Ariza A, Honarmand Ebrahimi K, Reber JM, Krassnig SC, Ahel D, van der Marel GA, Mangerich A, McCullagh JSO, Filippov DV, Ahel I Nat Commun. 2021 Jul 28;12(1):4581. doi: 10.1038/s41467-021-24723-3. PMID:34321462<ref>PMID:34321462</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7aqm" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Coelacanth]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ahel I]]
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[[Category: Ahel, I]]
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[[Category: Rack JGM]]
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[[Category: Rack, J G.M]]
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[[Category: Zorzini V]]
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[[Category: Zorzini, V]]
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[[Category: Adp-ribosylserine hydrolase]]
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[[Category: Alpha-1''-o-methyl-adp ribose]]
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[[Category: Arh3]]
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[[Category: Hydrolase]]
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[[Category: Latimeria chalumnae]]

Revision as of 05:49, 6 October 2021

ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with alpha-1-O-methyl-ADP-ribose (meADPr)

PDB ID 7aqm

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[[Category: Alpha-1-o-methyl-adp ribose]]

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