6ye4
From Proteopedia
(Difference between revisions)
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==Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy== | ==Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy== | ||
| - | <StructureSection load='6ye4' size='340' side='right'caption='[[6ye4]]' scene=''> | + | <StructureSection load='6ye4' size='340' side='right'caption='[[6ye4]], [[Resolution|resolution]] 3.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YE4 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6ye4]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_marcescens"_(bizio_1823)_trevisan_in_de_toni_and_trevisan_1889 "bacillus marcescens" (bizio 1823) trevisan in de toni and trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YE4 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ye4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ye4 OCA], [https://pdbe.org/6ye4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ye4 RCSB], [https://www.ebi.ac.uk/pdbsum/6ye4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ye4 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGT:(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL+STEARATE'>PGT</scene></td></tr> |
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">exbB, FG174_21755, PWN146_03792 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=615 "Bacillus marcescens" (Bizio 1823) Trevisan in de Toni and Trevisan 1889])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ye4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ye4 OCA], [https://pdbe.org/6ye4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ye4 RCSB], [https://www.ebi.ac.uk/pdbsum/6ye4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ye4 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | RELION, for REgularized LIkelihood OptimizatioN, is an open-source computer program for the refinement of macromolecular structures by single-particle analysis of electron cryo-microscopy (cryo-EM) data. Whereas alternative approaches often rely on user expertise for the tuning of parameters, RELION uses a Bayesian approach to infer parameters of a statistical model from the data. This paper describes developments that reduce the computational costs of the underlying maximum a posteriori (MAP) algorithm, as well as statistical considerations that yield new insights into the accuracy with which the relative orientations of individual particles may be determined. A so-called gold-standard Fourier shell correlation (FSC) procedure to prevent overfitting is also described. The resulting implementation yields high-quality reconstructions and reliable resolution estimates with minimal user intervention and at acceptable computational costs. | ||
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| + | RELION: implementation of a Bayesian approach to cryo-EM structure determination.,Scheres SH J Struct Biol. 2012 Dec;180(3):519-30. doi: 10.1016/j.jsb.2012.09.006. Epub 2012 , Sep 19. PMID:23000701<ref>PMID:23000701</ref> | ||
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| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6ye4" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[ExbB|ExbB]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Biou V]] | + | [[Category: Biou, V]] |
| - | [[Category: Chami M]] | + | [[Category: Chami, M]] |
| - | [[Category: Coureux | + | [[Category: Coureux, P D]] |
| - | [[Category: Delepelaire P]] | + | [[Category: Delepelaire, P]] |
| + | [[Category: Iron uptake]] | ||
| + | [[Category: Membrane protein]] | ||
| + | [[Category: Metal transport]] | ||
| + | [[Category: Proton transfer]] | ||
| + | [[Category: Tonb complex]] | ||
Revision as of 12:46, 13 October 2021
Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy
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