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3e42
From Proteopedia
(Difference between revisions)
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==Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)== | ==Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)== | ||
| - | <StructureSection load='3e42' size='340' side='right' caption='[[3e42]], [[Resolution|resolution]] 2.68Å' scene=''> | + | <StructureSection load='3e42' size='340' side='right'caption='[[3e42]], [[Resolution|resolution]] 2.68Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3e42]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3e42]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_influenzae"_lehmann_and_neumann_1896 "bacterium influenzae" lehmann and neumann 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E42 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E42 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3e41|3e41]], [[2gih|2gih]], [[3e3y|3e3y]], [[3e40|3e40]], [[3e43|3e43]], [[3e44|3e44]], [[3e45|3e45]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3e41|3e41]], [[2gih|2gih]], [[3e3y|3e3y]], [[3e40|3e40]], [[3e43|3e43]], [[3e44|3e44]], [[3e45|3e45]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hindIIR, HI0512 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hindIIR, HI0512 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e42 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e42 OCA], [https://pdbe.org/3e42 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e42 RCSB], [https://www.ebi.ac.uk/pdbsum/3e42 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e42 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/T2D2_HAEIN T2D2_HAEIN]] Recognizes the double-stranded sequence GTYRAC and cleaves after Y-3. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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==See Also== | ==See Also== | ||
| - | *[[Endonuclease|Endonuclease]] | + | *[[Endonuclease 3D structures|Endonuclease 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Bacterium influenzae lehmann and neumann 1896]] | [[Category: Bacterium influenzae lehmann and neumann 1896]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Type II site-specific deoxyribonuclease]] | [[Category: Type II site-specific deoxyribonuclease]] | ||
[[Category: Babic, A C]] | [[Category: Babic, A C]] | ||
Revision as of 19:34, 20 October 2021
Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)
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Categories: Bacterium influenzae lehmann and neumann 1896 | Large Structures | Type II site-specific deoxyribonuclease | Babic, A C | Horton, N C | Little, E J | Manohar, V M | Endonuclease | Hydrolase | Hydrolase-dna complex | Indirect readout | Nuclease | Protein-dna interaction | Restriction endonuclease | Restriction system
