3glx
From Proteopedia
(Difference between revisions)
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==Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)== | ==Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)== | ||
- | <StructureSection load='3glx' size='340' side='right' caption='[[3glx]], [[Resolution|resolution]] 1.85Å' scene=''> | + | <StructureSection load='3glx' size='340' side='right'caption='[[3glx]], [[Resolution|resolution]] 1.85Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3glx]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3glx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_diphtheriae"_kruse_in_flugge_1886 "bacillus diphtheriae" kruse in flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GLX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GLX FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2qqa|2qqa]], [[2qqb|2qqb]], [[2qq9|2qq9]], [[1ddn|1ddn]], [[1p92|1p92]], [[1xcv|1xcv]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2qqa|2qqa]], [[2qqb|2qqb]], [[2qq9|2qq9]], [[1ddn|1ddn]], [[1p92|1p92]], [[1xcv|1xcv]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP1414, dtxR ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP1414, dtxR ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1717 "Bacillus diphtheriae" Kruse in Flugge 1886])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3glx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3glx OCA], [https://pdbe.org/3glx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3glx RCSB], [https://www.ebi.ac.uk/pdbsum/3glx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3glx ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [[ | + | [[https://www.uniprot.org/uniprot/DTXR_CORDI DTXR_CORDI]] Iron-binding repressor of the dipheteria toxin gene expression. May serve as a global regulator of gene expression. Represses ripA under iron excess. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gl/3glx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gl/3glx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</div> | </div> | ||
<div class="pdbe-citations 3glx" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 3glx" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Diphtheria toxin repressor|Diphtheria toxin repressor]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Bacillus diphtheriae kruse in flugge 1886]] | [[Category: Bacillus diphtheriae kruse in flugge 1886]] | ||
+ | [[Category: Large Structures]] | ||
[[Category: Aquino, J A.D]] | [[Category: Aquino, J A.D]] | ||
[[Category: Aquino, K E.D]] | [[Category: Aquino, K E.D]] |
Revision as of 20:08, 20 October 2021
Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)
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Categories: Bacillus diphtheriae kruse in flugge 1886 | Large Structures | Aquino, J A.D | Aquino, K E.D | Denninger, A | Moulin, A | Ringe, D | Activation | Cytoplasm | Dna-binding | Dtxr | Ferrous iron | Helix-turn-helix | Iron | Metal ion | Regulator | Repressor | Transcription | Transcription regulation | Transcriptional regulation | Transcriptional regulator