6p5z
From Proteopedia
(Difference between revisions)
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==Cobalt-sirohydrochlorin-bound S. typhimurium siroheme synthase== | ==Cobalt-sirohydrochlorin-bound S. typhimurium siroheme synthase== | ||
- | <StructureSection load='6p5z' size='340' side='right'caption='[[6p5z]]' scene=''> | + | <StructureSection load='6p5z' size='340' side='right'caption='[[6p5z]], [[Resolution|resolution]] 2.26Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P5Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6p5z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_typhimurium"_loeffler_1892 "bacillus typhimurium" loeffler 1892]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P5Z FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p5z OCA], [https://pdbe.org/6p5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p5z RCSB], [https://www.ebi.ac.uk/pdbsum/6p5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p5z ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=F0X:cobalt-sirohydrochlorin'>F0X</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr> |
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6p5x|6p5x]]</div></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cobA, cysG, C2253_19735, CET98_25025, D7F20_23535, D7H43_21790, DJ388_17225, NCTC13348_03825 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 "Bacillus typhimurium" Loeffler 1892])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p5z OCA], [https://pdbe.org/6p5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p5z RCSB], [https://www.ebi.ac.uk/pdbsum/6p5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p5z ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [[https://www.uniprot.org/uniprot/A0A0F7JCI1_SALER A0A0F7JCI1_SALER]] Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.[HAMAP-Rule:MF_01646][SAAS:SAAS00971394] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Siroheme is the central cofactor in a conserved class of sulfite and nitrite reductases that catalyze the six-electron reduction of sulfite to sulfide and nitrite to ammonia. In Salmonella enterica serovar Typhimurium, siroheme is produced by a trifunctional enzyme, siroheme synthase (CysG). A bifunctional active site that is distinct from its methyltransferase activity catalyzes the final two steps, NAD(+)-dependent dehydrogenation and iron chelation. How this active site performs such different chemistries is unknown. Here, we report the structures of CysG bound to precorrin-2, the initial substrate; sirohydrochlorin, the dehydrogenation product/chelation substrate; and a cobalt-sirohydrochlorin product. We identified binding poses for all three tetrapyrroles and tested the roles of specific amino acids in both activities to give insights into how a bifunctional active site catalyzes two different chemistries and acts as an iron-specific chelatase in the final step of siroheme synthesis. | ||
+ | |||
+ | Siroheme synthase orients substrates for dehydrogenase and chelatase activities in a common active site.,Pennington JM, Kemp M, McGarry L, Chen Y, Stroupe ME Nat Commun. 2020 Feb 13;11(1):864. doi: 10.1038/s41467-020-14722-1. PMID:32054833<ref>PMID:32054833</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6p5z" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Bacillus typhimurium loeffler 1892]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Pennington | + | [[Category: Pennington, J M]] |
- | [[Category: Stroupe | + | [[Category: Stroupe, M E]] |
+ | [[Category: Biosynthetic protein]] | ||
+ | [[Category: Cysg]] | ||
+ | [[Category: Tetrapyrrole biosynthesis]] |
Revision as of 14:13, 29 December 2021
Cobalt-sirohydrochlorin-bound S. typhimurium siroheme synthase
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