6zm8

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==Structure of muramidase from Acremonium alcalophilum==
==Structure of muramidase from Acremonium alcalophilum==
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<StructureSection load='6zm8' size='340' side='right'caption='[[6zm8]]' scene=''>
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<StructureSection load='6zm8' size='340' side='right'caption='[[6zm8]], [[Resolution|resolution]] 0.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZM8 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6zm8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Acremonium_alcalophilum Acremonium alcalophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZM8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZM8 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zm8 OCA], [https://pdbe.org/6zm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zm8 RCSB], [https://www.ebi.ac.uk/pdbsum/6zm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zm8 ProSAT]</span></td></tr>
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</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zm8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zm8 OCA], [https://pdbe.org/6zm8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zm8 RCSB], [https://www.ebi.ac.uk/pdbsum/6zm8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zm8 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Muramidases/lysozymes hydrolyse the peptidoglycan component of the bacterial cell wall. They are found in many of the glycoside hydrolase (GH) families. Family GH25 contains muramidases/lysozymes, known as CH type lysozymes, as they were initially discovered in the Chalaropsis species of fungus. The characterized enzymes from GH25 exhibit both beta-1,4-N-acetyl- and beta-1,4-N,6-O-diacetylmuramidase activities, cleaving the beta-1,4-glycosidic bond between N-acetylmuramic acid (NAM) and N-acetylglucosamine (NAG) moieties in the carbohydrate backbone of bacterial peptidoglycan. Here, a set of fungal GH25 muramidases were identified from a sequence search, cloned and expressed and screened for their ability to digest bacterial peptidoglycan, to be used in a commercial application in chicken feed. The screen identified the enzyme from Acremonium alcalophilum JCM 736 as a suitable candidate for this purpose and its relevant biochemical and biophysical and properties are described. We report the crystal structure of the A. alcalophilum enzyme at atomic, 0.78 A resolution, together with that of its homologue from Trichobolus zukalii at 1.4 A, and compare these with the structures of homologues. GH25 enzymes offer a new solution in animal feed applications such as for processing bacterial debris in the animal gut.
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Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78A resolution.,Moroz OV, Blagova E, Taylor E, Turkenburg JP, Skov LK, Gippert GP, Schnorr KM, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Nymand-Grarup S, Davies GJ, Wilson KS PLoS One. 2021 Mar 12;16(3):e0248190. doi: 10.1371/journal.pone.0248190., eCollection 2021. PMID:33711051<ref>PMID:33711051</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6zm8" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Acremonium alcalophilum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Blagova E]]
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[[Category: Lysozyme]]
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[[Category: Cohn MT]]
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[[Category: Blagova, E]]
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[[Category: Davies GJ]]
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[[Category: Cohn, M T]]
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[[Category: Gippert GP]]
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[[Category: Davies, G J]]
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[[Category: Klausen M]]
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[[Category: Gippert, G P]]
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[[Category: Ming L]]
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[[Category: Klausen, M]]
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[[Category: Moroz OV]]
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[[Category: Ming, L]]
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[[Category: Nymand-Grarup S]]
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[[Category: Moroz, O V]]
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[[Category: Schmidt EGW]]
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[[Category: Nymand-Grarup, S]]
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[[Category: Schnorr KM]]
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[[Category: Schmidt, E G.W]]
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[[Category: Skov LK]]
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[[Category: Schnorr, K M]]
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[[Category: Taylor E]]
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[[Category: Skov, L K]]
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[[Category: Turkenburg JP]]
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[[Category: Taylor, E]]
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[[Category: Wilson KS]]
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[[Category: Turkenburg, J P]]
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[[Category: Ye L]]
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[[Category: Wilson, K S]]
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[[Category: Ye, L]]
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[[Category: Fungal]]
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[[Category: Gh25]]
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[[Category: Hydrolase]]
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[[Category: Industrial application]]
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[[Category: Muramidase]]
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[[Category: Peptidoglycan cleavage]]

Revision as of 07:06, 27 January 2022

Structure of muramidase from Acremonium alcalophilum

PDB ID 6zm8

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