3c5n

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==Structure of human TULP1 in complex with IP3==
==Structure of human TULP1 in complex with IP3==
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<StructureSection load='3c5n' size='340' side='right' caption='[[3c5n]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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<StructureSection load='3c5n' size='340' side='right'caption='[[3c5n]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3c5n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3C5N FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3c5n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C5N FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=I3P:D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE'>I3P</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=I3P:D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE'>I3P</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2fim|2fim]]</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2fim|2fim]]</div></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TULP1, TUBL1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TULP1, TUBL1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3c5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5n OCA], [http://pdbe.org/3c5n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3c5n RCSB], [http://www.ebi.ac.uk/pdbsum/3c5n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5n ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c5n OCA], [https://pdbe.org/3c5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c5n RCSB], [https://www.ebi.ac.uk/pdbsum/3c5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c5n ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/TULP1_HUMAN TULP1_HUMAN]] Defects in TULP1 are the cause of retinitis pigmentosa type 14 (RP14) [MIM:[http://omim.org/entry/600132 600132]]. RP leads to degeneration of retinal photoreceptor cells. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP14 inheritance is autosomal recessive.<ref>PMID:19837063</ref> <ref>PMID:9660588</ref> <ref>PMID:9462750</ref> <ref>PMID:15557452</ref> <ref>PMID:17620573</ref> Defects in TULP1 are the cause of Leber congenital amaurosis type 15 (LCA15) [MIM:[http://omim.org/entry/613843 613843]]. LCA15 is a severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus.<ref>PMID:15024725</ref> <ref>PMID:17962469</ref>
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[[https://www.uniprot.org/uniprot/TULP1_HUMAN TULP1_HUMAN]] Defects in TULP1 are the cause of retinitis pigmentosa type 14 (RP14) [MIM:[https://omim.org/entry/600132 600132]]. RP leads to degeneration of retinal photoreceptor cells. Patients typically have night vision blindness and loss of midperipheral visual field. As their condition progresses, they lose their far peripheral visual field and eventually central vision as well. RP14 inheritance is autosomal recessive.<ref>PMID:19837063</ref> <ref>PMID:9660588</ref> <ref>PMID:9462750</ref> <ref>PMID:15557452</ref> <ref>PMID:17620573</ref> Defects in TULP1 are the cause of Leber congenital amaurosis type 15 (LCA15) [MIM:[https://omim.org/entry/613843 613843]]. LCA15 is a severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus.<ref>PMID:15024725</ref> <ref>PMID:17962469</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/TULP1_HUMAN TULP1_HUMAN]] Required for normal development of photoreceptor synapses. Required for normal photoreceptor function and for long-term survival of photoreceptor cells. Interacts with cytoskeleton proteins and may play a role in protein transport in photoreceptor cells (By similarity). Binds lipids, especially phosphatidylinositol 3-phosphate, phosphatidylinositol 4-phosphate, phosphatidylinositol 5-phosphate, phosphatidylinositol 3,4-bisphosphate, phosphatidylinositol 4,5-bisphosphate, phosphatidylinositol 3,4,5-bisphosphate, phosphatidylserine and phosphatidic acid (in vitro). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.<ref>PMID:16303976</ref> <ref>PMID:19837063</ref>
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[[https://www.uniprot.org/uniprot/TULP1_HUMAN TULP1_HUMAN]] Required for normal development of photoreceptor synapses. Required for normal photoreceptor function and for long-term survival of photoreceptor cells. Interacts with cytoskeleton proteins and may play a role in protein transport in photoreceptor cells (By similarity). Binds lipids, especially phosphatidylinositol 3-phosphate, phosphatidylinositol 4-phosphate, phosphatidylinositol 5-phosphate, phosphatidylinositol 3,4-bisphosphate, phosphatidylinositol 4,5-bisphosphate, phosphatidylinositol 3,4,5-bisphosphate, phosphatidylserine and phosphatidic acid (in vitro). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.<ref>PMID:16303976</ref> <ref>PMID:19837063</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5n_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/3c5n_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Arrowsmith, C H]]
[[Category: Arrowsmith, C H]]
[[Category: Berg, S Van den]]
[[Category: Berg, S Van den]]

Revision as of 07:44, 27 January 2022

Structure of human TULP1 in complex with IP3

PDB ID 3c5n

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