This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cqr
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH5== | ==Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH5== | ||
| - | <StructureSection load='3cqr' size='340' side='right' caption='[[3cqr]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='3cqr' size='340' side='right'caption='[[3cqr]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3cqr]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3cqr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CQR FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3cqn|3cqn]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3cqn|3cqn]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VDE1, AVDE1, NPQ1, VXDE ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VDE1, AVDE1, NPQ1, VXDE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Violaxanthin_de-epoxidase Violaxanthin de-epoxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.23.5.1 1.23.5.1] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cqr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cqr OCA], [https://pdbe.org/3cqr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cqr RCSB], [https://www.ebi.ac.uk/pdbsum/3cqr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cqr ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/VDE_ARATH VDE_ARATH]] Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light-harvesting protein complex of photosystem II.<ref>PMID:10982442</ref> <ref>PMID:11855651</ref> <ref>PMID:9668132</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 36: | Line 36: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Arath]] | [[Category: Arath]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Violaxanthin de-epoxidase]] | [[Category: Violaxanthin de-epoxidase]] | ||
[[Category: Arnoux, P]] | [[Category: Arnoux, P]] | ||
Current revision
Crystal Structure of the Lipocalin domain of Violaxanthin de-epoxidase (VDE) at pH5
| |||||||||||
Categories: Arath | Large Structures | Violaxanthin de-epoxidase | Arnoux, P | Morosinotto, T | Pignol, D | Antheraxanthin | Chloroplast | De-epoxidase | Enzyme | Lipocalin | Membrane | Non photochemical quenching | Npq | Oxidoreductase | Thylakoid | Transit peptide | Violaxanthin | Xanthophyll cycle | Zeaxanthin

