3dcq
From Proteopedia
(Difference between revisions)
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==LECB (PA-LII) in complex with the synthetic ligand 2G0== | ==LECB (PA-LII) in complex with the synthetic ligand 2G0== | ||
- | <StructureSection load='3dcq' size='340' side='right' caption='[[3dcq]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='3dcq' size='340' side='right'caption='[[3dcq]], [[Resolution|resolution]] 1.80Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3dcq]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3dcq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCQ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2G0:(2S)-1-[(2S)-6-AMINO-2-({[(2S,3S,4R,5S,6S)-3,4,5-TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]ACETYL}AMINO)HEXANOYL]-N-[(1S)-1-CARBAMOYL-3-METHYLBUTYL]PYRROLIDINE-2-CARBOXAMIDE'>2G0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2G0:(2S)-1-[(2S)-6-AMINO-2-({[(2S,3S,4R,5S,6S)-3,4,5-TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]ACETYL}AMINO)HEXANOYL]-N-[(1S)-1-CARBAMOYL-3-METHYLBUTYL]PYRROLIDINE-2-CARBOXAMIDE'>2G0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1oxc|1oxc]], [[1oux|1oux]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1oxc|1oxc]], [[1oux|1oux]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lecB, PA3361 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lecB, PA3361 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcq OCA], [https://pdbe.org/3dcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcq RCSB], [https://www.ebi.ac.uk/pdbsum/3dcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcq ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcq_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcq_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
[[Category: Bartels, K M]] | [[Category: Bartels, K M]] | ||
[[Category: Buts, L]] | [[Category: Buts, L]] |
Revision as of 08:00, 2 February 2022
LECB (PA-LII) in complex with the synthetic ligand 2G0
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Categories: Large Structures | Bartels, K M | Buts, L | Cacciarini, M | Camara, M | Crusz, S A | Darbre, T | Diggle, S P | Jaeger, K E | Johansson, E M | Kadam, R U | Kolomiets, E | Loris, R | Nativi, C | Reymond, J L | Rosenau, F | Williams, P | Carbohydrate | Lectin | Sugar binding protein