7eo6
From Proteopedia
(Difference between revisions)
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==X-ray structure analysis of xylanase== | ==X-ray structure analysis of xylanase== | ||
| - | <StructureSection load='7eo6' size='340' side='right'caption='[[7eo6]]' scene=''> | + | <StructureSection load='7eo6' size='340' side='right'caption='[[7eo6]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EO6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EO6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7eo6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EO6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EO6 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eo6 OCA], [https://pdbe.org/7eo6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eo6 RCSB], [https://www.ebi.ac.uk/pdbsum/7eo6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eo6 ProSAT]</span></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> |
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eo6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eo6 OCA], [https://pdbe.org/7eo6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eo6 RCSB], [https://www.ebi.ac.uk/pdbsum/7eo6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eo6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Xylanase is efficient for xylan degradation and widely applied in industries. We found a GH11 family xylanase (Xyn11A) with high thermostability and catalytic activity from compost metatranscriptome. This xylanase has the optimal reaction temperature at 80 degrees C with the activity of 2907.3 U/mg. The X-ray crystallographic structure shows a typical "right hand" architecture, which is the characteristics of the GH11 family enzymes. Comparing it with the mesophilic XYN II, a well-studied GH11 xylanase from Trichoderma reesei, Xyn11A is more compact with more H-bonds. Our mutagenic results show that the electrostatic interactions in the thumb and palm region of Xyn11A could result in its high thermostability and activity. Introducing a disulfide bond at the N-terminus further increased its optimal reaction temperature to 90 degrees C with augmented activity. KEY POINTS: * A hyperthermophilic xylanase with high activity was discovered using the metatranscriptomic method. * The mechanisms of thermophilicity and high activity were revealed using X-ray crystallography, mutagenesis, and molecular dynamics simulations. * The thermostability and activity were further improved by introducing a disulfide bond. | ||
| + | |||
| + | Characterization and structural analysis of a thermophilic GH11 xylanase from compost metatranscriptome.,Yi Y, Xu S, Kovalevsky A, Zhang X, Liu D, Wan Q Appl Microbiol Biotechnol. 2021 Oct;105(20):7757-7767. doi:, 10.1007/s00253-021-11587-2. Epub 2021 Sep 23. PMID:34553251<ref>PMID:34553251</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7eo6" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Endo-1,4-beta-xylanase]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Wan Q]] | + | [[Category: Wan, Q]] |
| - | [[Category: Xu S]] | + | [[Category: Xu, S]] |
| - | [[Category: Yi Y]] | + | [[Category: Yi, Y]] |
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Xylanase]] | ||
Revision as of 10:54, 16 February 2022
X-ray structure analysis of xylanase
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